Table 4 Pfam domains expressed by all fungi during nematode infection a
From: Interspecific and host-related gene expression patterns in nematode-trapping fungi
Putative functions | Pfam domains |
|---|---|
Peptidase | Peptidase_S8 (PF00082); Aspartyl protease (PF00026); Peptidase_M3 (PF01432); Peptidase_S10 (PF00450); |
Cell-surface proteins | WSC (PF01822) |
Others | CFEM (PF05730); Ricin-type lectin (PF14200) |
Stress response, chaperons | Thioredoxin (PF00085); Glutathione S-transferase (PF00043); Catalase (PF00199); AhpC/TSA family (PF00578); DnaJ (PF00226); HSP20 (PF00011); HSP70 (PF00012); HSP90 (PF00183); Peptidylprolyl isomerase (PF00254, PF00160) |
Cell signaling | RHO protein GDP dissociation inhibitor (PF02115); ADP Ribosylation Factors (ARFs) (PF00025); 14-3-3- proteins (PF00244); Pkinase (PF00069); Ras (PF00071) |
Calcium-binding protein | Calreticulin (PF00262); EF-hand motif (PF13499) |
Cytoskeleton | Actin (PF00022); Cofilin (PF00241); Profilin (PF00235); Tropomyosin (PF12718); Tubulin (PF00091) |
Autophagy | Atg8 (PF02991) |
Peroxisome | Membrane protein Mpv17_PMP22 (PF04117) |
Trancription | Multiprotein bridging factor 1 (PF08523); Homeobox (PF00046); TATA binding protein (PF00352); bZIP Transcription factor (PF00170, PF07716); Histone (PF00125, PF00538); Nucleosome assembly protein (PF00956); Helicases (PF00270, PF00271) |
Membrane transport | ABC transporter (PF00005) Amino acids permease (PF00324); Ammonium transporter (PF00909); Major Facilitator Superfamily (PF07690); Sugar and others (PF00083); Porin (PF01459) |
Vesicular transport | Syntaxin (PF05739); Synaptobrevin (PF00957); Rab GDP dissociation inhibitors (PF00996) |
Metabolism, glycolysis/gluconeogenesis | Enolase (PF03952); Fructose-bisphosphate aldolase (PF01116); Triose-phosphate isomerase (PF00121); Glyceraldehyde 3-phosphate dehydrogenase (PF00044); Phosphoglycerate kinase (PF00162); Pyruvate kinase (PF00224); Pyruvate carboxylase (PF00682) |
Metabolism, pentose phosphate pathway | Phosphogluconate dehydrogenase (PF03446, PF00479); Transaldolase (PF00923); Transketolase (PF00456) |
Metabolism, TCA | lactate/malate dehydrogenase (PF02866, PF00056); Succinyl coenzyme A synthetase (PF00549) |
Metabolism, energy | Cyt-b5 (PF00173); ATP synthase (PF00887, PF00137); mitochondrial carrier (PF00153); ATPases (PF00006, PF02874) |
Metabolism, amino acids | Glutamine amidotransferases (PF00310); NAD-specific glutamate dehydrogenase (PF10712); Glutamine synthetase (PF03951) |
Metabolism, miscellaneous | Glycoside hydrolase family 1 (PF00232); Biotin-requiring enzyme (PF00364) aldo-keto reductase family (PF00248); Aldehyde dehydrogenase family (PF00171); Short-chain dehydrogenases/reductases family (PF00106); Pyrophosphatase (PF00719); Myo-inositol-1-phosphate synthase(PF01658, PF07994); FA desaturase (PF00487); Nucleoside diphosphate kinase (PF00334); UDP-glucose pyrophosphorylase (PF01704); Transketolase, pyrimidine binding domain (PF02779); ATPase (PF00004); CoA binding domain (PF02629) ATP-grasp_2 (PF08442); Calcineurin-like phosphoesterase (PF00149); Epimerase (PF01370) |
Protein degradation | Proteasome (PF00227, PF10584); Ubiquitination (PF00240, PF00240, PF00179) |
Protein synthesis | Elongation factors (PF10587, PF01873, PF00009); tRNA synthetases (PF00587); translation, initiation factors W2 (PF02020), SUI1 (PF01253), MIF4G (PF02854); Ribosomal proteins (PF00428, PF00428, PF00687, PF00466, PF00238, PF00827, PF00252, PF14204, PF01775,PF00828, PF00861, PF01280, PF03947, PF01157, PF01776, PF01246, PF01777, PF00831, PF00297, PF01198, PF01655, PF01780, PF01907, PF01020, PF00935, PF00281, PF00347, PF01159, PF01248, PF00411, PF00164, PF00416, PF00253, PF00833, PF00203, PF01090, PF00318, PF01282, PF03297,PF01283, PF01667, PF01015, PF00163, PF00333, PF00177, PF00410, PF01201, PF00380, PF08071) |