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Table 4 Pfam domains expressed by all fungi during nematode infection a

From: Interspecific and host-related gene expression patterns in nematode-trapping fungi

Putative functions Pfam domains
Peptidase Peptidase_S8 (PF00082); Aspartyl protease (PF00026); Peptidase_M3 (PF01432); Peptidase_S10 (PF00450);
Cell-surface proteins WSC (PF01822)
Others CFEM (PF05730); Ricin-type lectin (PF14200)
Stress response, chaperons Thioredoxin (PF00085); Glutathione S-transferase (PF00043); Catalase (PF00199); AhpC/TSA family (PF00578); DnaJ (PF00226); HSP20 (PF00011); HSP70 (PF00012); HSP90 (PF00183); Peptidylprolyl isomerase (PF00254, PF00160)
Cell signaling RHO protein GDP dissociation inhibitor (PF02115); ADP Ribosylation Factors (ARFs) (PF00025); 14-3-3- proteins (PF00244); Pkinase (PF00069); Ras (PF00071)
Calcium-binding protein Calreticulin (PF00262); EF-hand motif (PF13499)
Cytoskeleton Actin (PF00022); Cofilin (PF00241); Profilin (PF00235); Tropomyosin (PF12718); Tubulin (PF00091)
Autophagy Atg8 (PF02991)
Peroxisome Membrane protein Mpv17_PMP22 (PF04117)
Trancription Multiprotein bridging factor 1 (PF08523); Homeobox (PF00046); TATA binding protein (PF00352); bZIP Transcription factor (PF00170, PF07716); Histone (PF00125, PF00538); Nucleosome assembly protein (PF00956); Helicases (PF00270, PF00271)
Membrane transport ABC transporter (PF00005) Amino acids permease (PF00324); Ammonium transporter (PF00909); Major Facilitator Superfamily (PF07690); Sugar and others (PF00083); Porin (PF01459)
Vesicular transport Syntaxin (PF05739); Synaptobrevin (PF00957); Rab GDP dissociation inhibitors (PF00996)
Metabolism, glycolysis/gluconeogenesis Enolase (PF03952); Fructose-bisphosphate aldolase (PF01116); Triose-phosphate isomerase (PF00121); Glyceraldehyde 3-phosphate dehydrogenase (PF00044); Phosphoglycerate kinase (PF00162); Pyruvate kinase (PF00224); Pyruvate carboxylase (PF00682)
Metabolism, pentose phosphate pathway Phosphogluconate dehydrogenase (PF03446, PF00479); Transaldolase (PF00923); Transketolase (PF00456)
Metabolism, TCA lactate/malate dehydrogenase (PF02866, PF00056); Succinyl coenzyme A synthetase (PF00549)
Metabolism, energy Cyt-b5 (PF00173); ATP synthase (PF00887, PF00137); mitochondrial carrier (PF00153); ATPases (PF00006, PF02874)
Metabolism, amino acids Glutamine amidotransferases (PF00310); NAD-specific glutamate dehydrogenase (PF10712); Glutamine synthetase (PF03951)
Metabolism, miscellaneous Glycoside hydrolase family 1 (PF00232); Biotin-requiring enzyme (PF00364) aldo-keto reductase family (PF00248); Aldehyde dehydrogenase family (PF00171); Short-chain dehydrogenases/reductases family (PF00106); Pyrophosphatase (PF00719); Myo-inositol-1-phosphate synthase(PF01658, PF07994); FA desaturase (PF00487); Nucleoside diphosphate kinase (PF00334); UDP-glucose pyrophosphorylase (PF01704); Transketolase, pyrimidine binding domain (PF02779); ATPase (PF00004); CoA binding domain (PF02629) ATP-grasp_2 (PF08442); Calcineurin-like phosphoesterase (PF00149); Epimerase (PF01370)
Protein degradation Proteasome (PF00227, PF10584); Ubiquitination (PF00240, PF00240, PF00179)
Protein synthesis Elongation factors (PF10587, PF01873, PF00009); tRNA synthetases (PF00587); translation, initiation factors W2 (PF02020), SUI1 (PF01253), MIF4G (PF02854); Ribosomal proteins (PF00428, PF00428, PF00687, PF00466, PF00238, PF00827, PF00252, PF14204, PF01775,PF00828, PF00861, PF01280, PF03947, PF01157, PF01776, PF01246, PF01777, PF00831, PF00297, PF01198, PF01655, PF01780, PF01907, PF01020, PF00935, PF00281, PF00347, PF01159, PF01248, PF00411, PF00164, PF00416, PF00253, PF00833, PF00203, PF01090, PF00318, PF01282, PF03297,PF01283, PF01667, PF01015, PF00163, PF00333, PF00177, PF00410, PF01201, PF00380, PF08071)
  1. aShown are Pfam domains that were found among the top 500 most expressed isotigs in at least one library of each fungus and that are shared between all three fungi. In total 206 Pfam domains were found in this cohort (c.f. Figure 3B; Additional file 6). Pfam domains encoding protein motifs with unspecific or unknown functions are not shown. Bold indicates domains that were found among 25 expanded Pfam domains identified in the genome of M. haptotylum[20].