TY - JOUR AU - Turki, Turki AU - Roshan, Usman PY - 2014 DA - 2014/11/15 TI - MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence JO - BMC Genomics SP - 969 VL - 15 IS - 1 AB - Programs based on hash tables and Burrows-Wheeler are very fast for mapping short reads to genomes but have low accuracy in the presence of mismatches and gaps. Such reads can be aligned accurately with the Smith-Waterman algorithm but it can take hours and days to map millions of reads even for bacteria genomes. SN - 1471-2164 UR - https://doi.org/10.1186/1471-2164-15-969 DO - 10.1186/1471-2164-15-969 ID - Turki2014 ER -