Figure 1From: MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequenceOverview of the MaxSSmap program. In this figure the genome is divided into six fragments which means six threads will run on the GPU. Thread with ID 0 maps the read to fragment 0, slides it across fragment 0, and stops when it has covered all of fragment 0. We account for junctions between fragments and ensure that the read is fully mapped to the genome.Back to article page