|
(a) Percent of one million 251 bp reads mapped correctly to theE.coli genome. Shown in parenthesis are incorrectly mapped
|
|---|
|
reads and remaining are rejected
| |
|---|
|
Div
|
NextGenMap+
|
NextGenMap+
|
NextGenMap+
|
NextGenMap+
|
|---|
| |
MaxSSmap_fast
|
MaxSSmap
|
CUDASW++
|
SSW
|
|---|
| |
Reads without gaps
| |
|
.1
|
96 (1.3)
|
97 (1.4)
|
97 (1)
|
97 (2.8)
|
|
.2
|
95 (1.5)
|
96.7 (1.5)
|
96 (1)
|
NA
|
|
.3
|
91 (1.4)
|
94.8 (1.3)
|
93 (1.5)
|
NA
|
| |
Reads with gaps
| |
|
.1
|
92 (1.5)
|
95.7 (1.4)
|
97 (1)
|
97.2 (2.8)
|
|
.2
|
92 (2.1)
|
94 (2.5)
|
95 (2)
|
NA
|
|
.3
|
82 (2.9)
|
90.5 (3.5)
|
92.5 (1.6)
|
NA
|
|
(b) Time in minutes to map one million 251 bp reads to the
E.coli
genome
|
|
Div
|
NextGenMap+
|
NextGenMap+
|
NextGenMap+
|
NextGenMap+
|
| |
MaxSSmap_fast
|
MaxSSmap
|
CUDASW++
|
SSW
|
| |
Reads without gaps
| |
|
.1
|
25
|
34
|
197
|
1397
|
|
.2
|
57
|
77
|
537
|
NA
|
|
.3
|
148
|
204
|
1343
|
NA
|
| |
Reads with gaps
| |
|
.1
|
38
|
60
|
413
|
2601
|
|
.2
|
68
|
109
|
756
|
NA
|
|
.3
|
162
|
222
|
1528
|
NA
|
- See Table 3 caption for details about reads. NA denotes time greater than 48 hours which is our cutoff time on this data.
