Table 5 Comparison of meta-methods to NextGenMap and BWA
(a) Percent of one million 251 bp reads mapped correctly to theE.coli genome. Shown in parenthesis are incorrectly mapped reads and remaining are rejected | ||||
|---|---|---|---|---|
Div | BWA | NextGenMap | NextGenMap+ | NextGenMap+ |
MaxSSmap_fast | MaxSSmap | |||
Reads without gaps | ||||
.1 | 89 (1.1) | 87 (1) | 96 (1.3) | 97 (1.4) |
.2 | 24 (0.5) | 72 (1) | 95 (1.5) | 96.7 (1.5) |
.3 | 0.6 (0) | 26 (0.5) | 91 (1.4) | 94.8 (1.3) |
Reads with gaps | ||||
.1 | 85 (3) | 78 (1) | 92 (1.5) | 95.7 (1.4) |
.2 | 20 (0.5) | 60 (1) | 92 (2.1) | 94 (2.5) |
.3 | 0.5 (0) | 19 (0.4) | 82 (2.9) | 90.5 (3.5) |
(b) Time in minutes to map one million 251 bp reads to the E.coli genome | ||||
Div | BWA | NextGenMap | NextGenMap+ | NextGenMap+ |
MaxSSmap_fast | MaxSSmap | |||
Reads without gaps | ||||
.1 | 0.7 | 1.2 | 25 | 34 |
.2 | 0.5 | 1.9 | 57 | 77 |
.3 | 0.4 | 2.1 | 148 | 204 |
Reads with gaps | ||||
.1 | 0.7 | 1.5 | 38 | 60 |
.2 | 0.5 | 2.1 | 68 | 109 |
.3 | 0.4 | 2.1 | 162 | 222 |