Skip to main content

Table 2 GO term enrichment in genes unique to IAF-45-CD

From: Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin

GO ID Term All Unique Expected p-value
GO:0006259 DNA metabolic process 92 22 2.39 8.12E-14
GO:0015074 DNA integration 11 10 0.29 7.02E-13
GO:0003676 nucleic acid binding 439 34 11.29 3.40E-07
GO:0044260 cellular macromolecule metabolic process 700 42 18.2 8.12E-07
GO:0090304 nucleic acid metabolic process 555 37 14.43 1.09E-06
GO:0003677 DNA binding 356 29 9.16 3.47E-06
GO:0034641 cellular nitrogen compound metabolic pro… 699 41 18.18 3.47E-06
GO:0006310 DNA recombination 18 8 0.47 4.47E-06
GO:0006139 nucleobase-containing compound metabolic… 631 38 16.41 1.09E-05
GO:0006807 nitrogen compound metabolic process 725 41 18.85 1.19E-05
GO:0043170 macromolecule metabolic process 803 42 20.88 7.57E-05
GO:0006304 DNA modification 7 5 0.18 1.92E-04
GO:0004803 transposase activity 4 4 0.1 3.03E-04
GO:0006305 DNA alkylation 4 4 0.1 3.83E-04
GO:0006306 DNA methylation 4 4 0.1 3.83E-04
GO:0006313 transposition, DNA-mediated 4 4 0.1 3.83E-04
GO:0032196 transposition 4 4 0.1 3.83E-04
GO:0040029 regulation of gene expression, epigeneti… 4 4 0.1 3.83E-04
GO:0044237 cellular metabolic process 1096 48 28.5 1.09E-03
GO:0008152 metabolic process 2048 66 53.26 8.94E-03
GO:0043414 macromolecule methylation 7 4 0.18 1.28E-02
GO:0043412 macromolecule modification 63 9 1.64 2.28E-02
GO:0032259 methylation 16 5 0.42 3.28E-02
  1. Gene ontology (GO) classifications were used to determine whether certain functional categories are enriched in the pool of genes unique to IAF-45-CD. The category ‘All’ indicates annotations for the entire IAF-45-CD chromosome; ‘Unique’ indicates annotations for genes unique to IAF-45-CD; ‘Expected’ indicates the number of unique genes expected if sampled at random from the pool of all unique genes found in the five genomes. The Bonferroni corrected p-values indicate the probability that the observed unique gene frequency is due to chance.