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Table 3 Highly divergent core genes

From: Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin

Gene name

CD hit

Predicted function

Sfla_0019

N/A

hypothetical

Sfla_0256

pfam05120

Gas vesicle protein G

Sfla_0695

TIGR03062

Unknown, required for phage infection

Sfla_0790

pfam04149

BldB family

Sfla_0791

N/A

HBP

Sfla_0852

pfam04149

BldB family

Sfla_0853

N/A

HBP

Sfla_1620

TIGR03921

type VII secretion-associated serine protease mycosin

Sfla_1621

N/A

hypothetical

Sfla_1909

N/A

hypothetical

Sfla_1910

N/A

hypothetical

Sfla_1911

N/A

cholesterol esterase

Sfla_2255

N/A

hypothetical

Sfla_2258

N/A

hypothetical

Sfla_2259

N/A

hypothetical

Sfla_2260

N/A

hypothetical

Sfla_2267

N/A

TadE-family protein

Sfla_2678

pfam04149

BldB family

Sfla_2704

pfam07228

stage II sporulation E protein

Sfla_2785

smart00530

HBP

Sfla_2786

pfam04149

BldB family

Sfla_2892

COG0642

Signal transduction histidine kinase

Sfla_2916

pfam06259

alpha/beta hydrolase fold

Sfla_2921

N/A

HBP

Sfla_2922

pfam04149

BldB family

Sfla_2930

N/A

hypothetical

Sfla_2931

N/A

hypothetical

Sfla_3203

TIGR02614

FtsW - Biosynthesis and degradation of murein sacculus and peptidoglycan

Sfla_3555

pfam04149

BldB family

Sfla_3556

N/A

HBP

Sfla_3613

COG4188

dienelactone hydrolase

Sfla_3767

cd06260

domain of unknown function

Sfla_3776

N/A

hypothetical

Sfla_3819

N/A

hypothetical

Sfla_3854

N/A

HBP

Sfla_3855

pfam04149

BldB family

Sfla_3958

N/A

hypothetical

Sfla_4039

N/A

hypothetical

Sfla_4041

N/A

regulatory protein

Sfla_4131

pfam04149

BldB family

Sfla_4132

pfam01381

HBP

Sfla_4158

N/A

hypothetical

Sfla_4267

N/A

hypothetical

Sfla_4283

pfam00535

glycosyl transferase family 2

Sfla_4288

cd03786

UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase

Sfla_4402

N/A

Fasciclin-like protein

Sfla_4439

pfam04149

BldB family

Sfla_4440

N/A

HBP

Sfla_4606

pfam04149

BldB family

Sfla_4607

N/A

HBP

Sfla_4660

COG0841

Cation/multidrug effluN/A pump

Sfla_5089

COG0641

Arylsulfatase regulator

Sfla_5090

N/A

hypothetical

Sfla_5091

pfam00931

NB-ARC

Sfla_5365

pfam02618

YceG-like family

Sfla_5366

PRK00258

shikimate 5-dehydrogenase

Sfla_6367

N/A

hypothetical

Sfla_6381

pfam00440

tetR family regulator

Sfla_6389

N/A

hypothetical

  1. A total of 59 core genes were found to have unusually high sequence variability (>5% nucleotide dissimilarity) between strains. These genes are listed using the IAF-45-CD sequence annotation and classified using CDD and RPSBLAST.
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BMC Genomics

ISSN: 1471-2164

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