Table 2 Candidate genes in the proposed inversion
From: Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus
Gene name | Gene location on LG1 (Mb) | SNP location on LG1 | Coding change | Pool frequency in males | Pool frequency in females | Male FPKM | Female FPKM |
|---|---|---|---|---|---|---|---|
Transcription factor SOX-6 (LOC100694759) | 10.22-10.30 | 10295869 | T789K | 0.3684 | 1 | 3.56951 | 4.24045 |
Ras-related protein R-Ras2 (LOC100693950) | 10.48-10.51 | 10506882 | R94STOP | 0.4615 | 0 | 6.78248 | 5.16947 |
Suppression of tumorigenicity 5 protein (LOC100693420) | 10.80-10.85 | - | - | - | - | 7.41571 | 2.09969 |
Ras association domain-containing protein 10 (LOC100693148) | 11.40-11.41 | - | - | - | - | 0.252165 | 0.0688204 |
AFG3-like protein 1 (LOC100702885) | 13.72-13.73 | - | - | - | - | 3.35696 | 0.36143 |
Wilms tumor protein homolog (LOC100701078) | 14.86-14.88 | 14873730 | A237V | 0.4545 | 0 | 22.5644 | 13.2172 |
Estrogen-related receptor gamma (LOC100704106) | 17.05-17.11 | 17093619 | R172H | 0.4333 | 0.06 | 0.370072 | 0.105597 |
Growth regulation by estrogen in breast cancer 1 (GREB1) | 17.41-17.42 | 17424470 | R1775C | 0.5333 | 0.0571 | 0.961782 | 0.65826 |