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Table 2 Candidate genes in the proposed inversion

From: Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus

Gene name Gene location on LG1 (Mb) SNP location on LG1 Coding change Pool frequency in males Pool frequency in females Male FPKM Female FPKM
Transcription factor SOX-6 (LOC100694759) 10.22-10.30 10295869 T789K 0.3684 1 3.56951 4.24045
Ras-related protein R-Ras2 (LOC100693950) 10.48-10.51 10506882 R94STOP 0.4615 0 6.78248 5.16947
Suppression of tumorigenicity 5 protein (LOC100693420) 10.80-10.85 - - - - 7.41571 2.09969
Ras association domain-containing protein 10 (LOC100693148) 11.40-11.41 - - - - 0.252165 0.0688204
AFG3-like protein 1 (LOC100702885) 13.72-13.73 - - - - 3.35696 0.36143
Wilms tumor protein homolog (LOC100701078) 14.86-14.88 14873730 A237V 0.4545 0 22.5644 13.2172
Estrogen-related receptor gamma (LOC100704106) 17.05-17.11 17093619 R172H 0.4333 0.06 0.370072 0.105597
Growth regulation by estrogen in breast cancer 1 (GREB1) 17.41-17.42 17424470 R1775C 0.5333 0.0571 0.961782 0.65826
  1. Sex-determination candidate genes within the proposed inversion with any codon changes and their FPKM values.
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