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Table 1 Publicly available data sources and freeware computational tools used to identify miRNA- targeted genes and to classify and visualize their biological functions (accessed November 22, 2013)

From: What do all the (human) micro-RNAs do?

Site name

URL

Reference

AmiGO (search utility for GO)

http://amigo.geneontology.org/

[23]

Gene Ontology (GO)

http://www.geneontology.org/

[22]

Gene Trail

http://genetrail.bioinf.uni-sb.de/

[24]

HUGO Gene Nomenclature Committee

http://www.genenames.org/

[25]

miRTarBase

http://mirtarbase.mbc.nctu.edu.tw/

[18]

NCBI gene index database

http://www.ncbi.nlm.nih.gov/gene/

 

PubMed

http://www.ncbi.nlm.nih.gov/pubmed

 

R software (version 3.0.2)

http://CRAN.R-project.org/

 

TarBase database

http://diana.cslab.ece.ntua.gr/tarbase/

[19]

TargetScan Human

http://www.targetscan.org/

[7]