Table 2 Predicted site counts and coverage

Maize

Total predicted sites

3,326,697

8,886,974

4,870,173

894,567

427,268

515,556

7,667,926

1,376,427

Predicted sites 100-1000 bp

1,898,039

5,083,913

3,105,315

320,985

71,742

134,944

3,823,749

583,683

Predicted sites 100-400 bp

1,010,023

3,701,470

1,815,078

175,669

23,107

69,468

2,690,200

246,190

Predicted sites 100-200 bp

391,160

1,936,120

746,075

78,672

10,382

21,045

1,436,751

103,861

Total predicted sites covered*

0.2226

0.2350

0.1705

0.1514

0.0604

0.0818

0.2684

0.0504

Covered sites 100-1000 bp*

0.3529

0.3465

0.2301

0.3701

0.3365

0.2986

0.4550

0.1068

Covered sites 100-400 bp*

0.5756

0.4721

0.3877

0.6503

0.7259

0.4126

0.6296

0.2439

Covered sites 100-200 bp*

0.5986

0.5589

0.5524

0.7354

0.6872

0.4372

0.6746

0.2884

Fraction of MQ 20 reads aligning to predicted sites

0.8363

0.8090

0.9000

0.9485

0.8373

0.8810

0.8874

0.8147

Rice

Total predicted sites

371,222

1,486,508

1,037,100

301,435

78,181

60,707

1,204,615

260,304

Predicted sites 100-1000 bp

188,264

875,739

641,398

128,513

14,728

10,684

565,466

111,036

Predicted sites 100-400 bp

90,536

623,512

408,979

70,456

6,146

4,093

371,004

49,065

Predicted sites 100-200 bp

37,870

308,092

183,142

32,571

2,145

1,175

188,652

19,823

Total predicted sites covered*

0.2150

0.5132

0.4420

0.3281

0.1224

0.0867

0.4048

0.1757

Covered sites 100-1000 bp*

0.3578

0.7423

0.6226

0.6715

0.6005

0.4536

0.7235

0.3819

Covered sites 100-400 bp*

0.7026

0.8692

0.8513

0.9136

0.8967

0.6426

0.8732

0.5978

Covered sites 100-200 bp*

0.8202

0.8684

0.8575

0.9062

0.9152

0.7668

0.8606

0.5681

Fraction of MQ 20 reads aligning to predicted sites

0.7138

0.9224

0.9457

0.9854

0.9138

0.9361

0.9484

0.8298