Skip to main content

Table 6 Vienna7 adults vs. wild Hawaiian wild-type adults differentially regulated genes GO term enrichment

From: A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California

Term Annotated Significant Expected Fisher exact test p-value
Up-regulated genes
GO:0044260 Cellular macromolecule metabolic process 1441 270 190.73 7.90E-14
GO:0006396 RNA processing 166 56 21.97 3.50E-12
GO:0044237 Cellular metabolic process 2258 372 298.87 1.40E-11
GO:0022613 Ribonucleoprotein complex biogenesis 73 31 9.66 4.60E-10
GO:0043170 Macromolecule metabolic process 1839 311 243.41 5.20E-10
GO:0008152 Metabolic process 2745 425 363.33 1.40E-09
GO:0034660 ncRNA metabolic process 74 30 9.79 3.40E-09
GO:0071704 Organic substance metabolic process 2587 403 342.41 6.90E-09
GO:0042254 Ribosome biogenesis 60 26 7.94 7.30E-09
GO:0006364 rRNA processing 35 19 4.63 8.00E-09
GO:0034470 ncRNA processing 53 24 7.02 9.60E-09
GO:0016072 rRNA metabolic process 36 19 4.76 1.50E-08
GO:0044238 Primary metabolic process 2432 382 321.9 1.70E-08
GO:0090304 Nucleic acid metabolic process 948 175 125.48 1.20E-07
GO:0006457 Protein folding 52 22 6.88 1.80E-07
GO:0034641 Cellular nitrogen compound metabolism 1291 221 170.88 8.10E-07
GO:0046483 Heterocycle metabolic process 1212 209 160.42 1.20E-06
GO:0006725 Cellular aromatic compound metabolism 1231 211 162.93 1.60E-06
GO:0006139 Nucleobase-containing compound metabolism 1166 201 154.33 2.30E-06
GO:0044267 Cellular protein metabolic process 609 118 80.61 2.50E-06
GO:1901360 Organic cyclic compound metabolism 1289 218 170.61 2.90E-06
GO:0006974 Response to DNA damage stimulus 136 38 18 3.00E-06
GO:0000075 Cell cycle checkpoint 44 18 5.82 4.30E-06
GO:0031570 DNA integrity checkpoint 33 15 4.37 5.80E-06
GO:0030163 Protein catabolic process 110 32 14.56 7.30E-06
GO:0044265 Cellular macromolecule catabolic process 143 38 18.93 1.10E-05
GO:0071156 Regulation of cell cycle arrest 47 18 6.22 1.30E-05
GO:0000077 DNA damage checkpoint 28 13 3.71 1.90E-05
GO:0009451 RNA modification 18 10 2.38 2.50E-05
GO:0007050 Cell cycle arrest 58 20 7.68 2.70E-05
GO:0016071 mRNA metabolic process 122 33 16.15 2.80E-05
GO:0051603 Proteolysis involved in cellular protein… 88 26 11.65 4.00E-05
GO:0006807 Nitrogen compound metabolic process 1455 234 192.58 5.70E-05
GO:0006270 DNA replication initiation 10 7 1.32 5.70E-05
GO:0044257 Cellular protein catabolic process 90 26 11.91 6.10E-05
GO:0019079 Viral genome replication 13 8 1.72 6.30E-05
GO:0007093 Mitotic cell cycle checkpoint 31 13 4.1 7.00E-05
GO:0022403 Cell cycle phase 246 54 32.56 7.10E-05
GO:0009057 Macromolecule catabolic process 201 46 26.6 8.70E-05
GO:0010389 Regulation of G2/M transition of mitotic… 28 12 3.71 0.0001
GO:0051329 Interphase of mitotic cell cycle 73 22 9.66 0.00011
Down-regulated genes
GO:0071482 Cellular response to light stimulus 14 11 1.59 9.80E-09
GO:0007603 Phototransduction, visible light 10 9 1.14 2.70E-08
GO:0016056 Rhodopsin mediated signaling pathway 10 9 1.14 2.70E-08
GO:0048646 Anatomical structure formation involved… 662 118 75.31 4.80E-08
GO:0007600 Sensory perception 142 39 16.15 6.40E-08
GO:0009583 Detection of light stimulus 29 15 3.3 9.60E-08
GO:0009584 Detection of visible light 19 12 2.16 9.80E-08
GO:0042692 Muscle cell differentiation 123 35 13.99 1.20E-07
GO:0001539 Ciliary or flagellar motility 11 9 1.25 1.30E-07
GO:0051239 Regulation of multicellular organismal processes 413 81 46.98 1.70E-07
GO:0003008 System process 462 88 52.55 1.90E-07
GO:0009581 Detection of external stimulus 38 17 4.32 2.00E-07
GO:0016059 Deactivation of rhodopsin mediated signa… 9 8 1.02 2.20E-07
GO:0022400 Regulation of rhodopsin mediated signali… 9 8 1.02 2.20E-07
GO:0009582 Detection of abiotic stimulus 39 17 4.44 3.20E-07
GO:0055002 Striated muscle cell development 86 27 9.78 4.00E-07
GO:0007602 Phototransduction 21 12 2.39 4.60E-07
GO:0055001 Muscle cell development 92 28 10.47 5.00E-07
GO:0030239 Myofibril assembly 36 16 4.1 5.10E-07
GO:0061061 Muscle structure development 174 42 19.79 9.80E-07
GO:0050953 Sensory perception of light stimulus 70 23 7.96 1.20E-06
GO:0051606 Setection of stimulus 48 18 5.46 2.10E-06
GO:0071478 Cellular response to radiation 20 11 2.28 2.40E-06
GO:0007018 Microtubule-based movement 53 19 6.03 2.40E-06
GO:0007601 Visual perception 68 22 7.74 2.80E-06
GO:0050877 Neurological system process 385 73 43.8 3.00E-06
GO:0048468 Cell development 610 104 69.39 3.70E-06
GO:0009653 Anatomical structure morphogenesis 761 124 86.57 3.80E-06
GO:0044707 Single-multicellular organism process 1699 239 193.27 4.80E-06
GO:0051146 Striated muscle cell differentiation 108 29 12.29 5.40E-06
GO:0030182 Neuron differentiation 331 64 37.65 6.90E-06
GO:0032501 Multicellular organismal process 1737 242 197.59 9.10E-06
GO:0031032 Actomyosin structure organization 44 16 5.01 1.20E-05
GO:0040011 Locomotion 380 70 43.23 1.40E-05
GO:0009416 Response to light stimulus 55 18 6.26 1.90E-05
GO:0032101 Regulation of response to external stimuli 55 18 6.26 1.90E-05
GO:0071214 Cellular response to abiotic stimulus 28 12 3.19 2.20E-05
GO:0007606 Sensory perception of chemical stimulus 56 18 6.37 2.50E-05
GO:0032989 Cellular component morphogenesis 362 66 41.18 3.70E-05
GO:0048699 generation of neurons 356 65 40.5 4.10E-05
GO:2000026 Regulation of multicellular organismal development 228 46 25.94 5.10E-05