Transcriptomic analysis of the phytopathogenic oomycete Phytophthora cactorum provides insights into infection-related effectors

Table 5 d N /d S analysis of pairwise comparisons of the RXLR alleles

Gene ID	Pairwise comparisons		Full sequences				N-terminus^b				C-terminus^b
Gene ID	Seq. 1	Seq. 2	dN	dS	d N/dS^a	P value	dN	dS	d N/dS^a	P value	dN	dS	d N/dS^a	P value
PcRXLR6	10300	PH-1-8-03	0.0091	0.0045	2.0222	4.5e-01	0	0	–	7.3e-01	0.0122	0.0064	1.9063	5.8e-01
	10300	PH-1-14-04	0.0036	0.0089	0.4045	4.4e-01	0	0	–	5.9e-01	0.0049	0.0128	0.3828	5.4e-01
	PH-1-8-03	PH-1-14-04	0.0054	0.0045	1.2000	8.7e-01	0	0	–	9.2e-01	0.0073	0.0064	1.1406	8.7e-01
PcRXLR7	PC7	10300	0.0019	0	∞	3.2e-01	0.0042	0	∞	3.2e-01	0	0	–	6.0e-01

^aThe ‘∞’ in column dN/dS refers to pairwise comparisons in which dN >0 and dS =0, and ‘–’ refers to pairwise comparisons in which dN =0 and dS = 0.
^bThe N-terminus refers to the sequence from the 1st to the end of dEER, and the C-terminus refers to the sequence from the immediate residue after dEER to the end, except the stop codon.

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