Figure 1

Stability and reproducibility of the biological replicates used for CAGE. The scatter plots show the correlation between expression values in replicates 1 and 2 in both the sham (A) and ONC (C) groups. Stability is a score used for clustering reproducible TSSs in multiple replicates. Green dots indicate high reproducibility and red dots indicate low reproducibility. The bar graphs represent a reproducibility evaluation for each pair of replicates in the sham (B) and ONC (D) groups. Green indicates TSS clusters with high reproducibility between the replicates. Red indicates TSS clusters with low reproducibility between the replicates.