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Table 1 Top 10 up- and down-regulated genes in each peak type after ONC

From: Retinal transcriptome profiling at transcription start sites: a cap analysis of gene expression early after axonal injury

Gene

Gene accession

Log2fold-change

Adjusted P-value

Up-regulated at top peaks

Bcat1

NM_007532

6.70

7.80E-04

Sprr1a

NM_009264

4.66

1.80E-23

Mmp12

NM_008605

4.36

1.70E-39

Adcyap1

NM_009625

4.27

7.10E-08

Zfp275

NM_001160229

3.88

3.50E-02

Ecel1

NM_001277925

3.60

2.00E-07

Crabp2

NM_007759

3.56

2.60E-10

Arhgef2

NM_001198911

3.53

2.40E-02

Gal

NM_010253

3.49

7.60E-07

Asns

NM_012055

3.44

3.50E-06

Up-regulated at bottom peaks

Sprr1a

NM_009264

4.76

3.90E-31

Mmp12

NM_008605

4.14

1.80E-51

Ecel1

NM_001277925

3.74

1.60E-20

Crabp2

NM_007759

3.55

2.40E-11

Gal

NM_010253

3.49

1.80E-18

Cox6a2

NM_009943

3.25

2.50E-11

Thoc7

NM_001013578

3.21

9.10E-03

Zfand2b

NM_026846

3.20

2.00E-04

Tnfrsf12a

NM_001161746

2.95

6.60E-06

Arhgef2

NM_001198911

2.92

3.00E-09

Down-regulated at top peaks

Gng4

NM_010317

-6.39

7.50E-03

Ak4

NM_009647

-3.45

2.50E-02

Ndufa13

NM_023312

-3.02

3.10E-02

Tusc5

NM_177709

-2.40

1.70E-04

Nrgn

NM_022029

-2.20

8.00E-03

Fxyd7

NM_022007

-2.15

7.50E-12

Ctxn3

NM_001134697

-2.09

4.60E-03

Tppp3

NM_026481

-1.58

3.00E-02

Pvalb

NM_013645

-1.53

1.80E-05

Sncg

NM_011430

-1.46

4.60E-03

Down-regulated at bottom peaks

Scarna9

NR_028568

-2.66

3.10E-02

Tusc5

NM_177709

-2.43

9.10E-06

Cnn3

NM_028044

-2.41

8.60E-03

Fxyd7

NM_022007

-1.62

4.50E-13

Ctxn3

NM_001134697

-1.58

1.80E-04

Rasgrp2

NM_011242

-1.47

2.20E-07

Tmsb10

NM_001039392

-1.44

4.50E-05

Bcl2

NM_009741

-1.43

6.80E-03

1500009C09Rik

NR_037698

-1.41

4.30E-05

Oasl1

NM_145209

-1.34

4.30E-05

  1. Differences were considered significant with an adjusted P-value < 0.05 and |fold-change| > 1.5.