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Table 10 Gene regulation patterns in the flavonoid pathway

From: Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture

Enzyme EC number Up-regulated Down-regulated
   Unigene ID Expression level fold Unigene ID Expression level fold
PAL 4.3.1.24 Unigene10327_All 1.1 Unigene83336_All −1.9
Unigene89418_All 1 Unigene56631_All −1.9
   Unigene64872_All −1.6
Unigene619_All −1.3
Unigene9322_All −1
C4H 1.14.13.11 Unigene67845_All 1.4 Unigene17324_All −2.5
   Unigene11543_All −1.7
Unigene93243_All −1.1
4CL 6.2.1.12 Unigene41852_All 2.2 Unigene88072_All −3.3
Unigene36813_All 1.2 Unigene37844_All −3
Unigene3277_All 1.1 Unigene68813_All −2.8
   Unigene44539_All −2.3
Unigene51006_All −2.2
Unigene32973_All −2.1
Unigene85725_All −2
Unigene28297_All −1.9
Unigene57823_All −1.8
Unigene520_All −1.7
Unigene19555_All −1.7
Unigene20812_All −1.5
Unigene10021_All −1.4
Unigene6803_All −1.4
Unigene20574_All −1.4
CHS 2.3.1.74 Unigene1735_All 1.5 Unigene35484_All −2.2
   Unigene31906_All −1.8
Unigene37184_All −1.4
Unigene33635_All −1.3
Unigene63145_All −1.3
Unigene55042_All −1.1
Unigene29406_All −1.1
F3H 1.14.11.9 Unigene49558_All 3.8 Unigene100816_All −1.6
Unigene5973_All 1.4 Unigene4657_All −1.6
   Unigene22973_All −1.4
Unigene4884_All −1.3
Unigene23932_All −1.1
FLS 1.14.11.23 Unigene49558_All 3.8 Unigene100816_All −1.6
Unigene89505_All 1.8 Unigene4657_All −1.6
Unigene56837_All 1.8 Unigene22973_All −1.4
Unigene26406_All 1.6 Unigene4884_All −1.3
   Unigene5973_All 1.4 Unigene23932_All −1.1
   Unigene33774_All −1
DFR 1.1.1.219    Unigene100192_All −2.8
Unigene40110_All −1.9
Unigene84008_All −1.7
Unigene49734_All −1.3
ANS 1.14.11.19 Unigene49558_All 3.8 Nigene100816_All −1.6
Unigene89505_All 1.8 Unigene4657_All −1.6
Unigene56837_All 1.8 Unigene4884_All −1.3
   Unigene30270_All −1.1
LAR 1.17.1.3    Unigene73982_All −1
  1. The genes include phenylalanine ammonia lyase (PAL), cinnamate-4-hydroxylase (C4H), 4-coumarate-CoA ligase (4CL), chalcone synthase (CHS), favanone-3-hydroxylase (F3H), flavonol synthase (FLS), dihydroflavonol-4-reductase (DFR), anthocyanin synthase (ANS) and leucoanthocyanidin reductase (LAR).