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Table 4 Transcription factors identified in Boesenbergia rotunda based on transcription factors in the rice database using iTAK software

From: Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture

  Transcription factor ( Boesenbergia rotunda) Number of genes Up-regulated Down-regulated Transcription factor ( Oryza sativa) Number of genes
1 C3H 17 0 6 C3H 70
2 MYB 16 1 4 MYB 184
3 NAC 13 1 5 NAC 143
4 WRKY 9 1 2 WRKY 98
5 bZIP 8 1 1 bZIP 91
6 AP2-EREBP 7 1 2 AP2-EREBP 164
7 C2H2 5 0 0 C2H2 123
8 G2-like 5 1 1 G2-like 45
9 HB 5 0 1 HB 94
10 TUB 5 0 0 TUB 15
11 bHLH 4 0 0 bHLH 135
12 GRAS 4 1 0 GRAS 60
13 Tify 4 0 1 Tify 17
14 FAR1 3 0 0 FAR1 8
15 LOB 3 0 0 LOB 36
16 MADS 3 0 0 MADS 69
17 PBF-2-like 3 0 0 PBF-2-like 2
18 ABI3VP1 2 0 0 ABI3VP1 55
19 Alfin-like 2 0 0 Alfin-like 9
20 BBR/BPC 2 0 0 BBR/BPC 4
21 BSD 2 0 0 BSD 10
22 C2C2-GATA 2 0 0 C2C2-GATA 25
23 SRS 2 0 0 SRS 5
24 Trihelix 2 0 0 Trihelix 26
25 ARF 1 0 1 ARF 27
26 BES1 1 0 0 BES1 6
27 C2C2-CO-like 1 1 0 C2C2-CO-like 8
28 C2C2-YABBY 1 0 1 C2C2-YABBY 8
29 CCAAT 1 0 0 CCAAT 51
30 EIL 1 0 0 EIL 9
31 GeBP 1 0 0 GeBP 13
32 GRF 1 0 0 GRF 12
33 mTERF 1 0 1 mTERF 34
34 OFP 1 0 0 OFP 31
35 zf-HD 1 0 0 zf-HD 14
36 ARR-B 0 0 0 ARR-B 9
37 C2C2-Dof 0 0 0 C2C2-Dof 30
38 CAMTA 0 0 0 CAMTA 6
39 CPP 0 0 0 CPP 11
40 CSD 0 0 0 CSD 2
41 DB 0 0 0 DBP 3
42 E2F-DP 0 0 0 E2F-DP 8
43 FHA 0 0 0 FHA 18
44 HRT 0 0 0 HRT 1
45 HSF 0 0 0 HSF 25
46 LFY 0 0 0 LFY 2
47 LIM 0 0 0 LIM 6
48 PLATZ 0 0 0 PLATZ 15
49 RWP-RK 0 0 0 RWP-RK 13
50 S1Fa-like 0 0 0 S1Fa-like 2
51 SBP 0 0 0 SBP 19
52 Sigma70-like 0 0 0 Sigma70-like 6
53 TAZ 0 0 0 TAZ 6
54 TCP 0 0 0 TCP 21
55 ULT 0 0 0 ULT 2
56 VOZ 0 0 0 VOZ 2
Total 139 8 26   1908