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Table 4 Transcription factors identified in Boesenbergia rotunda based on transcription factors in the rice database using iTAK software

From: Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture

 

Transcription factor ( Boesenbergia rotunda)

Number of genes

Up-regulated

Down-regulated

Transcription factor ( Oryza sativa)

Number of genes

1

C3H

17

0

6

C3H

70

2

MYB

16

1

4

MYB

184

3

NAC

13

1

5

NAC

143

4

WRKY

9

1

2

WRKY

98

5

bZIP

8

1

1

bZIP

91

6

AP2-EREBP

7

1

2

AP2-EREBP

164

7

C2H2

5

0

0

C2H2

123

8

G2-like

5

1

1

G2-like

45

9

HB

5

0

1

HB

94

10

TUB

5

0

0

TUB

15

11

bHLH

4

0

0

bHLH

135

12

GRAS

4

1

0

GRAS

60

13

Tify

4

0

1

Tify

17

14

FAR1

3

0

0

FAR1

8

15

LOB

3

0

0

LOB

36

16

MADS

3

0

0

MADS

69

17

PBF-2-like

3

0

0

PBF-2-like

2

18

ABI3VP1

2

0

0

ABI3VP1

55

19

Alfin-like

2

0

0

Alfin-like

9

20

BBR/BPC

2

0

0

BBR/BPC

4

21

BSD

2

0

0

BSD

10

22

C2C2-GATA

2

0

0

C2C2-GATA

25

23

SRS

2

0

0

SRS

5

24

Trihelix

2

0

0

Trihelix

26

25

ARF

1

0

1

ARF

27

26

BES1

1

0

0

BES1

6

27

C2C2-CO-like

1

1

0

C2C2-CO-like

8

28

C2C2-YABBY

1

0

1

C2C2-YABBY

8

29

CCAAT

1

0

0

CCAAT

51

30

EIL

1

0

0

EIL

9

31

GeBP

1

0

0

GeBP

13

32

GRF

1

0

0

GRF

12

33

mTERF

1

0

1

mTERF

34

34

OFP

1

0

0

OFP

31

35

zf-HD

1

0

0

zf-HD

14

36

ARR-B

0

0

0

ARR-B

9

37

C2C2-Dof

0

0

0

C2C2-Dof

30

38

CAMTA

0

0

0

CAMTA

6

39

CPP

0

0

0

CPP

11

40

CSD

0

0

0

CSD

2

41

DB

0

0

0

DBP

3

42

E2F-DP

0

0

0

E2F-DP

8

43

FHA

0

0

0

FHA

18

44

HRT

0

0

0

HRT

1

45

HSF

0

0

0

HSF

25

46

LFY

0

0

0

LFY

2

47

LIM

0

0

0

LIM

6

48

PLATZ

0

0

0

PLATZ

15

49

RWP-RK

0

0

0

RWP-RK

13

50

S1Fa-like

0

0

0

S1Fa-like

2

51

SBP

0

0

0

SBP

19

52

Sigma70-like

0

0

0

Sigma70-like

6

53

TAZ

0

0

0

TAZ

6

54

TCP

0

0

0

TCP

21

55

ULT

0

0

0

ULT

2

56

VOZ

0

0

0

VOZ

2

Total

139

8

26

 

1908

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