Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture

Table 6 Distributions of all unigenes and differentially expressed genes (DEGs) in KEGG database classification

Category	Sub-category	All genes with pathway annotation	DEGs with pathway annotation
Metabolism	Amino Acid Metabolism	2139	736
	Biosynthesis of Other Secondary Metabolites	1092	385
	Carbohydrate Metabolism	3353	1297
	Energy Metabolism	937	352
	Glycan Biosynthesis and Metabolism	278	86
	Lipid Metabolism	1445	514
	Metabolism of Cofactors and Vitamins	503	143
	Metabolism of Other Amino Acids	581	213
	Metabolism of Terpenoid and Polyketides	622	235
	Nucleotide Metabolism	2290	721
	Total	13240	4682
Genetic Information Processing	Folding, Sorting and Degradation	2,062	729
	Replication and Repair	923	275
	Translation	3588	1137
	Total	6,573	2,141
Environmental Information Processing	Membrane Transport	224	116
	Signal Transduction	288	94
	Total	512	210
Cellular Processes	Transport and Catabolism	1251	452
Cellular Processes	Total	1251	452
Organismal Systems	Environmental Adaptation	2122	675
	Immune System	140	36
	Total	2262	711
Total Unigenes		24316	7931

There are five major categories which include Metabolism, Genetic Information Processing, Environmental Information Processing, Cellular Processes and Organismal Systems.

ISSN: 1471-2164