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Table 6 Distributions of all unigenes and differentially expressed genes (DEGs) in KEGG database classification

From: Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture

Category Sub-category All genes with pathway annotation DEGs with pathway annotation
Metabolism Amino Acid Metabolism 2139 736
Biosynthesis of Other Secondary Metabolites 1092 385
Carbohydrate Metabolism 3353 1297
Energy Metabolism 937 352
Glycan Biosynthesis and Metabolism 278 86
Lipid Metabolism 1445 514
Metabolism of Cofactors and Vitamins 503 143
Metabolism of Other Amino Acids 581 213
Metabolism of Terpenoid and Polyketides 622 235
Nucleotide Metabolism 2290 721
Total 13240 4682
Genetic Information Processing Folding, Sorting and Degradation 2,062 729
Replication and Repair 923 275
Translation 3588 1137
Total 6,573 2,141
Environmental Information Processing Membrane Transport 224 116
Signal Transduction 288 94
Total 512 210
Cellular Processes Transport and Catabolism 1251 452
Total 1251 452
Organismal Systems Environmental Adaptation 2122 675
Immune System 140 36
Total 2262 711
Total Unigenes 24316 7931
  1. There are five major categories which include Metabolism, Genetic Information Processing, Environmental Information Processing, Cellular Processes and Organismal Systems.