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Table 1 The human and bovine (UMD3.1) TRAV/TRDV repertoires

From: Genomic analysis offers insights into the evolution of the bovine TRA/TRD locus

Subgroup Human Bovine
Total Functional Pseudo. Percentage functional Total Functional Pseudo. Incomplete Percentage functional
(Number of genes) (Number of genes)
AV1 2 2   100 1 1    100
AV2 1 1   100 7 5 2   71.4
AV3 1 1† 1† 100/0 7 7    100
AV4 1 1   100 3 2 1   66.7
AV5 1 1   100 2 2    100
AV6 1 1   100 4   3 1 0
AV7 1 1   100      
AV8 7 5 2 71.4 14 6 8   42.9
AV9 2 2   100 11 1 9 1 9.1
AV10 1 1   100 6 3 3   50
AV11 1   1 0 6   6   0
AV12 3 3   100 6 5   1 83.3
AV13 2 2   100 11 8 2 1 72.8
AV14 1 1   100 9 4 4 1 44.4
AV15 1   1 0      
AV16 1 1   100 2 2    100
AV17 1 1   100 3 1 2   33.3
AV18 1 1   100 8 3 5   37.5
AV19 1 1   100 7 5 2   71.4
AV20 1 1   100 5 5    100
AV21 1 1   100 4 3 1   75
AV22 1 1   100 29 14 14 1 48.3
AV23 1 1   100 24 4 20   16.7
AV24 1 1   100 10 1 8 1 10
AV25 1 1   100 22 11 10 1 50
AV26 2 2   100 39 22 13 4 56.4
AV27 1 1   100 1 1    100
AV28 1   1 0 4 3 1   75
AV29 1 1† 1† 100/0 3 2 1   66.7
AV30 1 1   100      
AV31 1   1 0      
AV32 1   1 0      
AV33 1   1 0 6 2 4   33.3
AV34 1 1   100 3   3   0
AV35 1 1   100 1 1    100
AV36 1 1   100 1 1    100
AV37 1   1 0 2   2   0
AV38 2 2   100 6 5   1 83.3
AV39 1 1   100 2 1 1   50
AV40 1 1   100      
AV41 1 1   100 1 1    100
AVX      29 23 5 1 79.3
AVY      7 7    100
DV1 1 1   100 60 48 8 4 80.0
DV2 1 1   100 1 1    100
DV3 1 1   100 1 1    100
DVb3      2 2    100
DVY      1 1    100
Total 57 46 (+2) 9 (+2) 80.7 371 215 138 18 58.0
  1. The numbers of total, functional and pseudogenes in each TRAV/TRDV subgroup in the germline human and bovine (UMD3.1) repertoires are shown. The percentage of genes in each subgroup that are functional has been calculated (for human genes that have alternative functional and non-functional alleles – denoted by †, two percentage values are shown). For the bovine TRAV/TRDV subgroups, the number of genes for which only incomplete genomic sequence was available is also shown. Details of the human TRAV/TRDV repertoire were taken from the IMGT database (http://www.imgt.org).