From: Genomic analysis offers insights into the evolution of the bovine TRA/TRD locus
TRAV/TRDV subgroup | EST evidence of use in TRA/TRD rearrangement | PCR data (iii) | ||||||
---|---|---|---|---|---|---|---|---|
No. of unique TRA/TRD chain sequences (iv) | Total number of unique TRAV/TRDV genes (v) | Identical genome matches | No. of matches >97% (viii) | No. of matches <97% (ix) | ||||
Number (vi) | Matching TRAV/TRDV gene (vii) | |||||||
TRA (i) | TRD (ii) | |||||||
AV1 | ● | 5 | 3 | 1 | A | 2 | ||
AV2 | 4 | 3 | 1 | G | 2 | |||
AV3 | ● | 13 | 8 | 5 | a, b, c, e, f | 3 | ||
AV4 | 2 | 2 | - | 2 | ||||
AV5 | ● | 1 | 1 | - | 1 | |||
AV8 | ● | 9 | 7 | 3 | I, l, n | 3 | 1 | |
AV9 | ● | 2 | 2 | 1 | K | 1 | ||
AV10 | ● | 5 | 3 | 1 | B | 2 | ||
AV12 | ● | 10 | 7 | 1 | D | 5 | 1 | |
AV13 | ● | 8 | 7 | 3 | f, j, k | 3 | 1 | |
AV14 | 2 | 2 | 1 | E | 1 | |||
AV16 | ● | 4 | 4 | 2 | a, b | 2 | ||
AV17 | ● | 8 | 4 | 2 | a, c | 2 | ||
AV18 | 2 | 2 | - | 2 | ||||
AV19 | 4 | 2 | 1 | C | 1 | |||
AV20 | 3 | 1 | 1 | E | ||||
AV21 | ● | 4 | 2 | 1 | C | 1 | ||
AV22 | ● | 11 | 9 | 2 | aa, w | 6 | 1 | |
AV23 | ● | 3 | 2 | 1 | X | 1 | ||
AV24 | 1 | 1 | - | 1 | ||||
AV25 | ● | 5 | 4 | 1 | v | 2 | 1 | |
AV26 | ● | 5 | 5 | 3 | aj, s, w | 2 | ||
AV27 | ● | 5 | 3 | - | 1 | 2 | ||
AV28 | ● | 3 | 2 | 2 | b, c | |||
AV29 | ● | 8 | 4 | 2 | a, b | 2 | ||
AV33 | ● | 7*/† | 6 | - | 1 | 5 | ||
AV34 | - | - | - | |||||
AV35 | ● | 3 | 2 | - | 2 | |||
AV36 | 2 | 1 | 1 | a | ||||
AV38 | 10 | 6 | - | 5 | 1 | |||
AV39 | - | |||||||
AV41 | ● | 1 | 1 | - | 1 | |||
AVX | ● | 35 | 23 | 11 | aa, ab, b, f, g, l, p, q, u, w, x | 12 | ||
AVY | 10 | 7 | 3 | d, e, g | 4 | |||
DV1 | ● | ● | 111*/† | 45 | 13 | af, ah, ai, as, au, b, bb, e, g, aj, bg, j, w | 25 | 7 |
DV2 | 2† | 1 | 1 | a | ||||
DV3 | ● | ● | 2† | 1 | 1 | a | ||
DVb3 | ● | 2† | 6 | 1 | b | 5 | ||
DVY | 29† | 2 | 1 | a | 1 | |||
Total | 341 | 191 | 67 | 103 | 21 |