|
No. of raw reads (Mbp)
|
575,918 (223.40)
|
562,862 (193.91)
|
1,138,780 (417.31)
|
|
No. of reads after trimming (Mbp)
|
559,019 (199.22)
|
549,791 (171.81)
|
1,097,384 (370.75)
|
|
Mean trimmed reads length (bp)
|
356
|
313
|
338
|
|
Range of trimmed reads (bp)
|
20 – 1,080
|
20 – 1,009
|
20 – 1,080
|
|
No. of aligned reads (Mbp)
|
529,779 (191.06)
|
522,279 (164.34)
|
1,054,990 (356.35)
|
|
De novo
assembly:
| | | |
|
1No. of assembled reads (%)
|
529,297 (95)
|
522,093 (95)
|
1,035,947 (94)
|
|
2No. of isotigs (Mbp)
|
15,956
|
16,711
|
23,675
|
|
N50 (bp)
|
915
|
914
|
910
|
|
No of singletons
|
6,235
|
6,618
|
9,383
|
|
Unigenes (≥100 bp):
| | | |
|
3All
|
20,503
|
21,553
|
28,828
|
|
4Clustered
|
20,439
|
21,494
|
28,720
|
|
Mean size (bp)
|
619
|
562
|
609
|
|
Size (Mbp)
|
12.658
|
12.090
|
17.491
|
|
≥ 500 bp (%)
|
9,732 (63)
|
8,633 (54)
|
12,785 (59)
|
|
≥ 1000 bp (%)
|
3,044 (20)
|
2,621 (16)
|
4,609 (21)
|
|
Annotation:
number (%) of annotated transcripts
|
|
InterPro
|
4,300 (21)
|
5,137 (24)
|
7,153 (25)
|
|
Pfam
|
3,829 (19)
|
4,469 (21)
|
6,335 (22)
|
|
NR
|
13,637 (67)
|
13,532 (63)
|
5na
|
|
Swiss-Prot
|
8,143 (40)
|
7,906 (37)
|
na
|
|
GO
|
7,293 (36)
|
7,069 (33)
|
na
|
|
KGG
|
6,612 (32)
|
6,102 (28)
|
na
|
