Analysis | B1K2 | B1K30 | B1K |
---|---|---|---|
Reads: | Â | Â | Â |
 No. of raw reads (Mbp) | 575,918 (223.40) | 562,862 (193.91) | 1,138,780 (417.31) |
 No. of reads after trimming (Mbp) | 559,019 (199.22) | 549,791 (171.81) | 1,097,384 (370.75) |
 Mean trimmed reads length (bp) | 356 | 313 | 338 |
 Range of trimmed reads (bp) | 20 – 1,080 | 20 – 1,009 | 20 – 1,080 |
 No. of aligned reads (Mbp) | 529,779 (191.06) | 522,279 (164.34) | 1,054,990 (356.35) |
De novo assembly: | Â | Â | Â |
 1No. of assembled reads (%) | 529,297 (95) | 522,093 (95) | 1,035,947 (94) |
 2No. of isotigs (Mbp) | 15,956 | 16,711 | 23,675 |
 N50 (bp) | 915 | 914 | 910 |
 No of singletons | 6,235 | 6,618 | 9,383 |
Unigenes (≥100 bp): |  |  |  |
 3All | 20,503 | 21,553 | 28,828 |
 4Clustered | 20,439 | 21,494 | 28,720 |
 Mean size (bp) | 619 | 562 | 609 |
 Size (Mbp) | 12.658 | 12.090 | 17.491 |
 ≥ 500 bp (%) | 9,732 (63) | 8,633 (54) | 12,785 (59) |
 ≥ 1000 bp (%) | 3,044 (20) | 2,621 (16) | 4,609 (21) |
Annotation: number (%) of annotated transcripts | |||
 InterPro | 4,300 (21) | 5,137 (24) | 7,153 (25) |
 Pfam | 3,829 (19) | 4,469 (21) | 6,335 (22) |
 NR | 13,637 (67) | 13,532 (63) | 5na |
 Swiss-Prot | 8,143 (40) | 7,906 (37) | na |
 GO | 7,293 (36) | 7,069 (33) | na |
 KGG | 6,612 (32) | 6,102 (28) | na |