Reference →
|
B1K30
|
Hv. fl-cDNA
|
Barley HC genes
|
Chr. Hv. WGS
|
---|
Reads →
|
B1K2
|
B1K2
|
B1K30
|
B1K
|
B1K2
|
B1K30
|
B1K
|
B1K2
|
B1K30
|
B1K
|
1
Aligned reads (%):
|
All
|
93.6
|
77.5
|
76.6
|
77
|
67.6
|
63
|
65.3
|
80.0
|
79.4
|
79.7
|
1x
|
52.7
|
47.1
|
47.5
|
47.3
|
51.8
|
48.6
|
50.2
|
32.7
|
35.7
|
34.2
|
>1x
|
40.9
|
30.3
|
29.2
|
29.7
|
15.8
|
14.4
|
15.1
|
47.3
|
43.7
|
45.5
|
SNPs:
|
Raw SNPs
|
28,289
|
27,279
|
24,637
|
40,639
|
16,284
|
14,509
|
24,446
|
39,545
|
36,021
|
61,852
|
Filtered SNPs
|
1,017
|
1,067
|
1,717
|
9,092
|
1,184
|
1,081
|
5,036
|
4,053
|
4,372
|
15,330
|
2Gene
| | | | |
132
|
299
|
1,805
|
1,010
|
1,488
|
4,389
|
SNPs/gene
| | | | |
9
|
3.6
|
2.8
|
4.0
|
2.9
|
3.5
|
SNPs/kb
|
4.4
|
3.5
|
2
|
1.78
|
7.3
|
2.8
|
2
|
3.5
|
2.6
|
2.4
|
- 1Aligned reads (%): proportion of all aligned reads, reads aligned 1x and over 1x.
- 2Gene: number of genes with SNPs.
- Mapping against chromosomal barley genome (Hordeum vulgare 030312 v2.16) was used for SNP effect annotation.