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Table 3 Homology within and among wild and domesticated barley sequences

From: Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcripts

Source

B1K2

B1K30

Hv*

No. of PUTs (%)

Transcript type

B1K2

√

x

x

3,245 (16)

B1K2-specific

√

√

x

413 (2)

wild barley-specific

√

x

√

7,648 (37)

B1K2- & Hv.-specific

√

√

√

9,133 (45)

in both wild & cultivated barley

B1K30

x

√

x

3,674 (17)

B1K30-specific

√

√

x

502 (2)

wild barley-specific

x

√

√

8,288 (39)

B1K30- & Hv.-specific

√

√

√

9,030 (42)

in both wild & cultivated barley

B1K

√

x

7,102 (25)

wild barley-specific

√

√

21,617 (75)

in both wild & cultivated barley

  1. *Hv: RBH against sequence data from barley HC, fl-cDNA and HarvEST v1.83 assembly 36.
  2. The orthologous analysis was based on RBH.