SNP effect | B1K2 | B1K30 | B1K | B1K2 | B1K30 | B1K | B1K2 | B1K30 | B1K |
---|---|---|---|---|---|---|---|---|---|
In all regions (#) | In genic region (%) | Mean per genic region | |||||||
Synonymous | 1,514 | 1,225 | 3,943 | 45.49 | 32.63 | 28.81 | 2.411 | 1.284 | 1.298 |
Non-synonymous | 699 | 564 | 1,919 | 21.00 | 15.02 | 14.02 | 1.113 | 0.591 | 0.632 |
3′ UTR | 816 | 1,546 | 6,570 | 24.52 | 41.18 | 48.01 | 1.299 | 1.621 | 2.163 |
5′ UTR | 154 | 149 | 458 | 4.63 | 3.97 | 3.35 | 0.245 | 0.156 | 0.151 |
Non-synonymous start | 1 | 2 | 2 | 0.03 | 0.05 | 0.01 | 0.002 | 0.002 | 0.001 |
Start lost | 0 | 1 | 1 | 0.00 | 0.03 | 0.01 | Â | 0.001 | 0.000 |
Stop gained | 8 | 14 | 27 | 0.24 | 0.37 | 0.20 | 0.013 | 0.015 | 0.009 |
1Splice site acceptor | 2 | 3 | 10 | 0.06 | 0.08 | 0.07 | 0.003 | 0.003 | 0.003 |
2Splice site donor | 3 | 6 | 13 | 0.09 | 0.16 | 0.09 | 0.005 | 0.006 | 0.004 |
Start gained | 26 | 31 | 95 | 0.78 | 0.83 | 0.69 | 0.041 | 0.032 | 0.031 |
Intron | 105 | 213 | 648 | 3.16 | 5.67 | 4.73 | Â | Â | Â |
3Upstream | 753 | 1,041 | 3,445 | Â | Â | Â | 0.746 | 0.70 | 0.785 |
4Downstream | 1,504 | 1,942 | 7,381 | Â | Â | Â | 1.489 | 1.31 | 1.682 |
Intergenic | 1,173 | 1,272 | 3,854 | Â | Â | Â | 0.167 | 0.223 | 0.213 |
Summary – SNPs with/in: |  |  |  |  | |||||
5High/moderate impact | 712 | 588 | 1,970 | Â | Â | Â | 1.134 | 0.616 | 0.648 |
6Gene region | 5,585 | 6,737 | 24,512 | Â | Â | Â | Â | Â | Â |
7Genic region | 3,328 | 3,754 | 13,686 | Â | Â | Â | Â | Â | Â |
8CDS/exon regions | 3,192 | 3,501 | 12,920 | Â | Â | Â | Â | Â | Â |
9Gene with genic SNPs | 628 | 954 | 3,039 | Â | Â | Â | Â | Â | Â |