Identification of conserved and polymorphic STRs for personal genomes

BMC Genomics

Table 5 Comprehensive STR statistics for all chromosomes, sorted by polymorphic STR density.

Chr	TLSTR (Mbp)	TLgene (Mbp)	TNgene	TNSTR	TNpSTR	TNpSTR/TLgene (Density, STRs /Mbp)	TNpSTR/TNSTR (Occurrence Ratio, %)
19	26.62	3074.71	2901	23255	2834	0.921	12.19
20	9.36	1668.80	1311	9836	1302	0.780	13.24
X	16.62	2983.31	2345	16769	2000	0.670	11.93
22	10.61	1674.64	1190	8716	1100	0.657	12.62
13	8.75	1977.35	1213	9002	1295	0.655	14.39
9	17.93	3533.43	2261	16386	2163	0.612	13.20
10	22.42	4403.78	2200	19231	2641	0.599	13.73
21	6.32	1226.41	711	5145	731	0.596	14.21
16	24.74	3858.90	2332	18462	2238	0.580	12.12
6	23.98	4997.39	2896	21135	2877	0.576	13.61
1	44.11	8295.52	5222	38217	4624	0.557	12.10
17	31.47	4813.97	2883	22240	2574	0.535	11.57
8	26.88	5590.48	2337	19247	2789	0.499	14.49
7	33.00	6499.22	2792	24975	3189	0.491	12.77
5	30.27	6396.45	2829	23459	3109	0.486	13.25
4	27.35	6111.19	2477	20358	2967	0.486	14.57
12	33.25	6107.63	2808	23543	2925	0.479	12.42
14	21.26	4147.19	2184	15323	1971	0.475	12.86
2	44.41	9299.27	3970	33220	4389	0.472	13.21
15	21.84	4292.70	2061	16459	1976	0.460	12.01
11	30.39	6155.13	3179	20975	2770	0.450	13.21
18	14.43	3121.40	1103	9448	1392	0.446	14.73
3	43.39	9234.03	3030	27336	3463	0.375	12.67

Chr = chromosome; TLSTR represents the total length of STRs in a query chromosome; TLgene is the total length of selected genes; TNgene is the total number of genes; TNSTR is the total number of STRs; TNpSTR is the total number of polymorphic STRs.

ISSN: 1471-2164