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Table 1 Computational resources required for the real data analysis

From: TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads

Tool Implementation CPU time in alignment (minutes) CPU time in estimation (minutes) Memory (GB)
TIGAR2 Java 18 12 8
TIGAR1 Java 18 53 8
RSEM C++ 10 24 2
TopHat-Cufflinks C++ 1,379 5 4
  1. The CPU time and memory required for the real data analysis with TIGAR2, TIGAR1, RSEM, and TopHat-Cufflinks are summarized.