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Table 2 Average precision and recall at 1% and 4% base error rates.

From: RandAL: a randomized approach to aligning DNA sequences to reference genomes

   35 bp 100 bp 400 bp
   Precision Recall Precision Recall Precision Recall
1% base error BWA-SW 97.60 82.86 98.30 98.29 98.98 98.98
  Bowtie2 97.60 93.40 98.31 98.25 99.00 99.00
  CUSHAW2 97.59 92.81 98.33 98.33 98.99 98.99
  RandAL 98.88 95.49 99.09 97.04 99.18 98.45
4% base error BWA-SW 97.64 44.93 98.31 97.05 98.97 98.96
  Bowtie2 97.61 62.92 98.32 91.62 98.96 98.94
  CUSHAW2 97.67 60.67 98.34 98.12 98.95 98.95
  RandAL 97.80 93.55 98.66 97.48 99.08 98.48