Table 2 Average precision and recall at 1% and 4% base error rates.
From: RandAL: a randomized approach to aligning DNA sequences to reference genomes
| Â | Â | 35 bp | 100 bp | 400 bp | |||
|---|---|---|---|---|---|---|---|
| Â | Â | Precision | Recall | Precision | Recall | Precision | Recall |
1% base error | BWA-SW | 97.60 | 82.86 | 98.30 | 98.29 | 98.98 | 98.98 |
| Â | Bowtie2 | 97.60 | 93.40 | 98.31 | 98.25 | 99.00 | 99.00 |
| Â | CUSHAW2 | 97.59 | 92.81 | 98.33 | 98.33 | 98.99 | 98.99 |
| Â | RandAL | 98.88 | 95.49 | 99.09 | 97.04 | 99.18 | 98.45 |
4% base error | BWA-SW | 97.64 | 44.93 | 98.31 | 97.05 | 98.97 | 98.96 |
| Â | Bowtie2 | 97.61 | 62.92 | 98.32 | 91.62 | 98.96 | 98.94 |
| Â | CUSHAW2 | 97.67 | 60.67 | 98.34 | 98.12 | 98.95 | 98.95 |
| Â | RandAL | 97.80 | 93.55 | 98.66 | 97.48 | 99.08 | 98.48 |