Table 5 Pearson correlation coefficients of repeat density and performance
From: RandAL: a randomized approach to aligning DNA sequences to reference genomes
| Â | Â | k = 35 | k = 51 | k = 76 | k = 100 | k = 200 | k = 400 |
|---|---|---|---|---|---|---|---|
Correlation of repeat density and precision | BWA-SW | -0.94 | -0.95 | -0.96 | -0.95 | -0.97 | -0.95 |
| Â | Bowtie2 | -0.94 | -0.95 | -0.96 | -0.96 | -0.97 | -0.95 |
| Â | CUSHAW2 | -0.94 | -0.94 | -0.95 | -0.95 | -0.95 | -0.93 |
| Â | RandAL | -0.84 | -0.83 | -0.87 | -0.88 | -0.93 | -0.94 |
Correlation of repeat density and recall | BWA-SW | -0.64 | -0.37 | -0.90 | -0.95 | -0.97 | -0.95 |
| Â | Bowtie2 | -0.95 | -0.94 | -0.96 | -0.97 | -0.97 | -0.96 |
| Â | CUSHAW2 | -0.95 | -0.94 | -0.95 | -0.95 | -0.95 | -0.93 |
| Â | RandAL | -0.95 | -0.96 | -0.97 | -0.97 | -0.97 | -0.96 |