Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

Table 1 Mapping Pt_input short sequencing reads to different P.trichocarpa genome assembly versions.

Genome reference version	Genome length (Mb)	# of scaffold	% GC	# of genes	# of transcript	Gene model overlap with v3	% of uniquely mapping reads	% of multiply mapping reads
Pt_v3	434.13	1,446	32.88	41,335	73,013	100%	45.02	28.97
Pt_v2	417.14	2,518	32.57	40,668	45,033	82.46%	47.38	19.28
Pt_v1	485.51	22,012	29.68	45,555	45,555	46.93%	47.28	34.77

- Data retrieved from: Pt_v3 - phytozome/v9.1; Pt_v2 - phytozome/v8.0; Pt_v1 - phytozome/v4.1/1.1.

ISSN: 1471-2164