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Table 1 Mapping Pt_input short sequencing reads to different P.trichocarpa genome assembly versions.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

Genome reference version Genome length (Mb) # of scaffold %
GC
# of genes # of transcript Gene model overlap with v3 % of uniquely mapping reads % of multiply mapping reads
Pt_v3 434.13 1,446 32.88 41,335 73,013 100% 45.02 28.97
Pt_v2 417.14 2,518 32.57 40,668 45,033 82.46% 47.38 19.28
Pt_v1 485.51 22,012 29.68 45,555 45,555 46.93% 47.28 34.77
  1. - Data retrieved from: Pt_v3 - phytozome/v9.1; Pt_v2 - phytozome/v8.0; Pt_v1 - phytozome/v4.1/1.1.