Skip to main content

Table 5 Effects of varying ratio of input control (C) to ARK1_3738 ChIP-seq (S) in MACS1.4 ChIP-seq peak calling.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

C/S ratio

0 :1

0.5 : 1

1 : 1

1.5 : 1

#reads (S)

67,680,143

67,680,143

67,680,143

67,680,143

#reads (C)

0

34,232,969

68,470,396

103,734,004

#peaks

19198

13961

15683

16526

mean width

704.9477

821.5005

794.4457

779.2845

mean score

498.1456

447.5715

535.8703

528.0994

  1. #reads was the total number of filtered reads passed into Bowtie2, "S" was the ChIP-seq sample, and "C" was the input control.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us