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Table 5 Effects of varying ratio of input control (C) to ARK1_3738 ChIP-seq (S) in MACS1.4 ChIP-seq peak calling.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

C/S ratio 0 :1 0.5 : 1 1 : 1 1.5 : 1
#reads (S) 67,680,143 67,680,143 67,680,143 67,680,143
#reads (C) 0 34,232,969 68,470,396 103,734,004
#peaks 19198 13961 15683 16526
mean width 704.9477 821.5005 794.4457 779.2845
mean score 498.1456 447.5715 535.8703 528.0994
  1. #reads was the total number of filtered reads passed into Bowtie2, "S" was the ChIP-seq sample, and "C" was the input control.