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Table 7 Overlap of peaks returned in different ratios of input control to ARK1_3738 ChIP-seq.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

C/S ratio

0 :1

0.5 : 1

1 : 1

1.5 : 1

0 : 1

100

97.93

95.75

95.76

0.5 : 1

97.93

100

99.68

99.79

1 : 1

95.75

99.68

100

98.78

1.5 : 1

95.76

99.79

98.78

100

  1. Numbers in the table represent % of peaks in smaller set that overlap with at least one peak in larger set.
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BMC Genomics

ISSN: 1471-2164

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