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Table 8 Effects of RNA pol II ChIP-seq coverage levels on peak calling.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

% of coverage 25% 40% 50% 75% 100%
#reads (S) 3,270,142 5,230,586 6,536,212 9,805,292 13,075,907
#reads (C) 3,111,220 4,976,697 6,222,374 9,332,876 12,443,567
#peaks 5890 7912 9170 11508 13350
mean width (bp) 715.0667 702.0507 773.6713 729.8757 877.0872
mean score 341.7044 381.6625 409.0407 442.2795 486.15
  1. #reads was the total number of filtered reads passed into Bowtie2, "S" was the ChIP-seq sample, and "C" was the input control.