Table 1 Results for Yersinia pestis.
From: Efficient and scalable scaffolding using optical restriction maps
Contigs | Method | Missed probability | % Resize | Conflicts | Wrong placement | % Accuracy | Time (s) |
|---|---|---|---|---|---|---|---|
50 | GPA1 | 0.0 | 0 | 0 | 0 | 100.00 | 31.97 |
| Â | Â | 0.1 | 5 | 0 | 0 | 100.00 | 29.45 |
| Â | Â | 0.2 | 10 | 0 | 0 | 100.00 | 29.07 |
| Â | Â | 0.3 | 20 | 27 | 1 | 44.00 | 25.99 |
| Â | GPA2 | 0.0 | 0 | 0 | 0 | 100.00 | 34.10 |
| Â | Â | 0.1 | 5 | 0 | 0 | 100.00 | 33.42 |
| Â | Â | 0.2 | 10 | 0 | 0 | 100.00 | 30.83 |
| Â | Â | 0.3 | 20 | 25 | 1 | 48.00 | 28.21 |
| Â | GPA3 | 0.0 | 0 | 0 | 0 | 100.00 | 35.02 |
| Â | Â | 0.1 | 5 | 0 | 0 | 100.00 | 32.41 |
| Â | Â | 0.2 | 10 | 0 | 0 | 100.00 | 27.76 |
| Â | Â | 0.3 | 20 | 12 | 2 | 72.00 | 27.24 |
100 | GPA1 | 0.0 | 0 | 1 | 0 | 99.00 | 34.05 |
| Â | Â | 0.1 | 5 | 4 | 0 | 96.00 | 31.23 |
| Â | Â | 0.2 | 10 | 7 | 0 | 93.00 | 27.76 |
| Â | Â | 0.3 | 20 | 45 | 6 | 49.00 | 25.92 |
| Â | GPA2 | 0.0 | 0 | 1 | 0 | 99.00 | 31.44 |
| Â | Â | 0.1 | 5 | 2 | 0 | 98.00 | 33.17 |
| Â | Â | 0.2 | 10 | 4 | 2 | 94.00 | 26.18 |
| Â | Â | 0.3 | 20 | 36 | 10 | 54.00 | 28.90 |
| Â | GPA3 | 0.0 | 0 | 1 | 0 | 99.00 | 32.41 |
| Â | Â | 0.1 | 5 | 0 | 0 | 100.00 | 30.10 |
| Â | Â | 0.2 | 10 | 1 | 0 | 99.00 | 29.64 |
| Â | Â | 0.3 | 20 | 27 | 6 | 67.00 | 29.04 |
200 | GPA1 | 0.0 | 0 | 3 | 0 | 98.50 | 36.90 |
| Â | Â | 0.1 | 5 | 8 | 0 | 96.00 | 33.28 |
| Â | Â | 0.2 | 10 | 21 | 0 | 89.50 | 33.11 |
| Â | Â | 0.3 | 20 | 69 | 4 | 63.5 | 29.61 |
| Â | GPA2 | 0.0 | 0 | 3 | 0 | 98.50 | 33.56 |
| Â | Â | 0.1 | 5 | 10 | 1 | 94.50 | 33.73 |
| Â | Â | 0.2 | 10 | 19 | 3 | 89.50 | 34.29 |
| Â | Â | 0.3 | 20 | 92 | 7 | 50.50 | 32.40 |
| Â | GPA3 | 0.0 | 0 | 3 | 0 | 98.50 | 34.93 |
| Â | Â | 0.1 | 5 | 5 | 0 | 97.50 | 35.96 |
| Â | Â | 0.2 | 10 | 12 | 1 | 93.50 | 32.25 |
| Â | Â | 0.3 | 20 | 52 | 5 | 71.5 | 32.16 |
400 | GPA1 | 0.0 | 0 | 8 | 0 | 98.00 | 40.17 |
| Â | Â | 0.1 | 5 | 20 | 2 | 94.50 | 35.00 |
| Â | Â | 0.2 | 10 | 56 | 7 | 84.25 | 32.21 |
| Â | Â | 0.3 | 20 | 120 | 15 | 66.25 | 30.47 |
| Â | GPA2 | 0.0 | 0 | 8 | 0 | 98.00 | 34.77 |
| Â | Â | 0.1 | 5 | 28 | 5 | 91.75 | 35.83 |
| Â | Â | 0.2 | 10 | 47 | 25 | 82.00 | 33.15 |
| Â | Â | 0.3 | 20 | 116 | 35 | 62.25 | 28.99 |
| Â | GPA3 | 0.0 | 0 | 7 | 0 | 98.25 | 37.64 |
| Â | Â | 0.1 | 5 | 18 | 0 | 95.50 | 31.70 |
| Â | Â | 0.1 | 5 | 29 | 8 | 90.75 | 31.50 |
| Â | Â | 0.3 | 20 | 162 | 21 | 76.75 | 31.70 |