Efficient and scalable scaffolding using optical restriction maps

BMC Genomics

Table 3 Results for simulated data.

Length	Contigs	Method	Placed	Observed length	Difference	Edit dist	Coverage	Time (s)
1 × 10⁵ bp	7	GPA1	6	84689	15311	15483	84.69%	0.40
		GPA2	6	84689	15311	15483	84.69%	0.45
		GPA3	6	84689	15311	15483	84.69%	0.37
3 × 10⁵ bp	34	GPA1	26	259619	40381	40923	86.54%	1.95
		GPA2	26	281905	18095	18917	93.97%	2.07
		GPA3	32	260662	39338	86220	86.89%	2.10
5 × 10⁵ bp	52	GPA1	39	445727	54273	55210	89.15%	4.67
		GPA2	39	454376	45624	50185	90.88%	5.46
		GPA3	38	431582	68418	69285	86.32%	4.67
7 × 10⁵ bp	53	GPA1	43	571908	128092	129160	81.70%	8.62
		GPA2	45	656139	45624	48593	93.73%	8.27
		GPA3	50	586588	113412	143189	83.80%	8.17

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