Skip to main content

Table 3 Read mapping statistics and read length for Ion Torrent HeLa datasets.

From: Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

Dataset

Type of cancer

# reads

# mapped reads

Mean read length (bp)

GOG-382

hepatocellular carcinoma

4,964,525

1,284,796

94

DID-416

myelogenous leukemia

5,024,097

1,115,392

89

DID-413

breast ductal carcinoma

3,134,849

690,870

108

  1. Reads are mapped to hg18 reference genome using TopHat2 with default parameters.