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Table 1 The results over 265 gene families from Ensembl.

From: Orthology and paralogy constraints: satisfiability and consistency

 

# satisfiable families

# consistent families

% constraints when consistent

−2

82 (30.9%)

30 (11.3%)

 

−1

44 (16.6%)

13 (4.91%)

 

0

26 (9.81%)

9 (3.40%)

 

+1

48 (18.1%)

14 (5.28%)

 

+2

55 (20.8%)

18 (6.79%)

 

−2/+2

260 (98.1%)

172 (64.9%)

42.0%

−2/+1

258 (97.4%)

172 (64.9%)

44.8%

−1/+1

254 (95.8%)

149 (56.2%)

50.6%

−1/+2

255 (95.9%)

157 (59.2%)

47.5%

  1. The first five rows correspond to the full constraint sets obtained from PROTEINORTHO for the five classes of parameters. The last four rows correspond to the partial constraint sets obtained after combining two graphs over two types of parameters. The first column is the number of families for which the settings of PROTEINORTHO yielded a satisfiable graph, the second that number consistent with the Ensembl species tree. The last column shows the percentage of constraints that were not unknown when a consistent solution was found (which is 100% for the first five rows).
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BMC Genomics

ISSN: 1471-2164

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