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Table 3 Comparison of the gene expression levels assayed by RNA sequencing and qPCR

From: RNA-sequencing analysis of Trichophyton rubrumtranscriptome in response to sublethal doses of acriflavine

ID Gene Product Name 3 h 12 h 24 h
   RNA-seq qPCR RNA-seq qPCR RNA-seq qPCR
TERG_02214 Zinc carboxypeptidase -2.59 -3.11 -3.51 -3.69 -4.20 -3.36
TERG_07861 Subtilase -2.54 -3.91 -3.61 -5.30 -4.81 -5.31
TERG_08557 Serine carboxypeptidase -1.54 -1.99 -0.92 -1.69 -2.14 -1.42
TERG_06573 Calcineurin regulatory subunit B -0.78 0.41 -1.28 0.68 -2.25 -0.42
TERG_06392 Calmodulin 0.97 0.45 0.78 0.51 1.02 0.50
TERG_02198 CamK protein kinase 0.29 1.22 0.74 1.68 1.68 3.33
TERG_01281 Malate synthase -0.67 0.03 -1.42 -1.06 -1.83 -1.16
TERG_03762 Malate dehydrogenase 1.15 1.11 1.14 2.45 2.21 2.64
TERG_01871 Acetyl-coa acetyltransferase 1.71 -0.86 1.28 -0.20 1.43 -0.16
TERG_04125 Citrate synthase 1.71 0.62 1.73 1.68 2.40 2.15
TERG_00825 Isocitrate lyase -1.22 -0.64 -2.18 -1.50 -2.69 -2.45
TERG_01076 Aconitase 0.73 -0.95 -0.31 -0.86 -0.92 -1.31
TERG_02979 Delta(24(24(1)))-sterol reductase (Erg4) -1.06 -0.80 -1.39 -0.86 -1.91 -0.70
TERG_03102 Sterol 24-C-methyltransferase (Erg6) -1.31 -0.31 -0.82 -0.68 -1.54 -0.53
TERG_01252 Catalase (catalase A) 1.70 1.77 2.45 3.35 2.80 3.24
TERG_06053 Catalase (peroxisomal catalase) 6.09 1.01 7.13 4.26 6.49 4.43
TERG_08613 Multidrug resistance protein Mdr2 -1.09 -0.85 -1.70 -1.34 -2.14 -1.70
TERG_07801 ABC multidrug transporter Mdr4 -0.69 0.91 2.6 1.63 3.13 2.30