From: SNPs selection using support vector regression and genetic algorithms in GWAS
Group | SNP selection with raw p-values* | # SNPs | Linear** | RBF** | PUK** |
---|---|---|---|---|---|
1 | < 10-9 | 1a | 0.53(0.07) | 0.94(0.04) | 0.95(0.04) |
2 | < 10-8 | 1a | 0.53(0.07) | 0.94(0.04) | 0.95(0.04) |
3 | < 10-7 | 1a | 0.53(0.07) | 0.94(0.04) | 0.95(0.04) |
4 | < 10-6 | 1a | 0.53(0.07) | 0.94(0.04) | 0.95(0.04) |
5 | < 10-5 | 3b | 0.53(0.07) | 0.94(0.04) | 0.95(0.04) |
6 | < 10-4 | 5 | 0.53(0.07) | 0.94(0.04) | 0.94(0.04) |
7 | < 10-3 | 15 | 0.53(0.07) | 0.94(0.04) | 0.95(0.04) |
8 | < 10-2 | 99 | 0.64(0.07) | 0.68(0.06) | 0.69(0.06) |
9 | < 10-1 | 995 | 0.66(0.06) | 0.79(0.04) | 0.80(0.04) |
10 | < 0.20 | 2,053 | 0.73(0.05) | 0.80(0.03) | 0.80(0.03) |
11 | < 0.30 | 3,079 | 0.74(0.04) | 0.79(0.03) | 0.79(0.03) |
12 | < 0.40 | 4,066 | 0.75(0.04) | 0.78(0.04) | 0.78(0.04) |
13 | < 0.50 | 5,033 | 0.74(0.04) | 0.75(0.04) | 0.76(0.04) |
14 | < 0.60 | 5,996 | 0.69(0.05) | 0.71(0.05) | 0.71(0.04) |
15 | < 0.70 | 6,950 | 0.63(0.05) | 0.64(0.05) | 0.65(0.05) |
16 | < 0.80 | 7,934c | 0.51(0.07) | 0.51(0.07) | 0.53(0.07) |
17 | < 0.90 | 8,893c | 0.33(0.10) | 0.32(0.10) | 0.33(0.10) |
18 | - | 5d | 0.53(0.07) | 0.97(0.02) | 0.99(0.01) |