From: Linkage disequilibrium and haplotype block structure in a composite beef cattle breed
Chr | Number of SNPs | Chr length (Mb) | Average SNPs distance (kb) | Number of blocks | Block coverage length (Mb) | % Chr block coverage | SNPs in blocks | % SNPs in blocks |
---|---|---|---|---|---|---|---|---|
1 | 41,830 | 158,306 | 3.78 | 4,787 | 103,419.90 | 65 | 33,411 | 80 |
2 | 36,178 | 136,763 | 3.78 | 4,118 | 90,048.32 | 66 | 28,981 | 80 |
3 | 32,061 | 121,405 | 3.79 | 3,653 | 79,147.48 | 65 | 25,442 | 79 |
4 | 31,800 | 120,635 | 3.79 | 3,677 | 76,877.07 | 64 | 25,018 | 79 |
5 | 31,160 | 121,182 | 3.89 | 3,446 | 79,131.14 | 65 | 25,222 | 81 |
6 | 32,480 | 119,423 | 3.68 | 3,764 | 76,983.56 | 64 | 25,998 | 80 |
7 | 29,879 | 112,595 | 3.77 | 3,310 | 74,287.94 | 66 | 23,993 | 80 |
8 | 29,907 | 113,346 | 3.79 | 3,414 | 72,761.84 | 64 | 23,790 | 80 |
9 | 28,552 | 105,667 | 3.70 | 3,275 | 69,607.56 | 66 | 22,817 | 80 |
10 | 27,824 | 104,283 | 3.75 | 3,211 | 64,087.69 | 61 | 21,370 | 77 |
11 | 28,788 | 107,269 | 3.73 | 3,252 | 68,632.31 | 64 | 22,857 | 79 |
12 | 23,562 | 91,125 | 3.87 | 2,665 | 55,775.42 | 61 | 18,327 | 78 |
13 | 20,886 | 84,207 | 4.03 | 2,461 | 52,981.54 | 63 | 16,071 | 77 |
14 | 22,235 | 84,035 | 3.78 | 2,596 | 54,099.85 | 64 | 17,579 | 79 |
15 | 22,019 | 85,229 | 3.87 | 2,639 | 52,643.91 | 62 | 17,107 | 78 |
16 | 22,021 | 81,685 | 3.71 | 2,495 | 51,656.07 | 63 | 17,177 | 78 |
17 | 20,144 | 75,146 | 3.73 | 2,377 | 45,306.63 | 60 | 15,517 | 77 |
18 | 17,611 | 65,913 | 3.74 | 2,032 | 39,490.48 | 60 | 13,492 | 77 |
19 | 17,032 | 63,964 | 3.76 | 1,982 | 37,624.33 | 59 | 12,606 | 74 |
20 | 19,407 | 71,950 | 3.71 | 2,324 | 43,679.74 | 61 | 15,038 | 77 |
21 | 19,101 | 71,568 | 3.75 | 2,205 | 46,122.94 | 64 | 14,919 | 78 |
22 | 16,610 | 61,279 | 3.69 | 1,893 | 36,982.78 | 60 | 12,655 | 76 |
23 | 13,695 | 52,459 | 3.83 | 1,660 | 27,629.29 | 53 | 9,482 | 69 |
24 | 16,983 | 62,542 | 3.68 | 1,948 | 38,866.11 | 62 | 13,065 | 77 |
25 | 11,671 | 42,823 | 3.67 | 1,396 | 23,924.44 | 56 | 8,522 | 73 |
26 | 13,820 | 51,642 | 3.74 | 1,657 | 30,037.78 | 58 | 10,402 | 75 |
27 | 11,822 | 45,400 | 3.84 | 1,447 | 24,658.49 | 54 | 8,573 | 73 |
28 | 11,872 | 46,243 | 3.90 | 1,411 | 24,333.07 | 53 | 8,406 | 71 |
29 | 13,077 | 51,180 | 3.91 | 1,578 | 28,700.01 | 56 | 9,556 | 73 |
Total | 664,027 | 2,509,262 | 3.78 ± 0.08 | 76,673 | 1,569,498 | 61 ± 4 | 517,393 | 77 ± 3 |