Table 3 Accuracy, sensitivity, PPV and F-Score in % for Ion Torrent dataset and fold change threshold f of 1, 1.5, and 2.
From: Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
Fold Change | Method | Accuracy % | Sensitivity % | PPV % | F-Score % |
|---|---|---|---|---|---|
FisherTotal | 71.68% | 72.76% | 90.56% | 80.69% | |
FisherHousekeeping | 67.15% | 66.87% | 94.74% | 78.40% | |
FisherERCC | 71.39% | 72.45% | 88.97% | 79.86% | |
1 | GFOLD | 75.77% | 77.55% | 90.43% | 83.50% |
IsoDE-Match | 81.75% | 86.38% | 82.18% | 84.05% | |
IsoDE-All | 81.46% | 86.07% | 82.13% | 84.05% | |
FisherTotal | 74.16% | 78.39% | 85.06% | 81.59% | |
FisherHousekeeping | 76.06% | 73.23% | 92.96% | 81.93% | |
FisherERCC | 74.31% | 78.59% | 85.45% | 81.87% | |
1.5 | GFOLD | 75.47% | 77.63% | 87.88% | 82.44% |
IsoDE-Match | 77.66% | 83.94% | 84.75% | 84.34% | |
IsoDE-All | 77.81% | 84.13% | 84.45% | 84.29% | |
FisherTotal | 79.71% | 83.02% | 84.00% | 83.51% | |
FisherHousekeeping | 81.75% | 80.70% | 88.75% | 84.53% | |
FisherERCC | 79.42% | 82.56% | 84.12% | 83.33% | |
2 | GFOLD | 80.58% | 76.74% | 90.66% | 83.12% |
IsoDE-Match | 81.75% | 85.81% | 84.63% | 85.22% | |
IsoDE-All | 81.61% | 86.28% | 84.13% | 85.19% |