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Table 2 Gene sets mapping from CP collections.

From: Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

  # proteins/genes detected exist in CP1 # mapped gene sets # genes in mapped gene sets
Run 1 1,170 864 225 4,231
Run 2 972 728 227 4,019
Run 3 909 677 221 4,137
Common pathways
for 3 runs
682 536 192 3,828
Intersection 682 536 190 3,561
Twice 996 753 229 4,119
Union 1,373 980 244 4,273
  1. "Gene sets" represent genes defined in CPs. The number of genes represents the sum of different genes across mapped CP.
  2. 1 Not all proteins detected in 50-cell sample are present in the gene sets within the CP collection. The number of proteins found in the CP collections is shown here.