From: Assessment of de novoassemblers for draft genomes: a case study with fungal genomes
Assembler
Website
Version
ABySS
http://www.bcgsc.ca/platform/bioinfo/software/abyss
1.3.7
IDBA-UD
http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/
1.0.9
Minia
http://minia.genouest.org/
1.5901
SOAPdenovo(SOAP)
http://soap.genomics.org.cn/soapdenovo.html
2-r240
SPAdes
http://bioinf.spbau.ru/spades
3.0.0
SparseAssembler(Sparse)
http://sourceforge.net/projects/sparseassembler/
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Velvet
https://www.ebi.ac.uk/~zerbino/velvet/
1.2.10