Table 5 Quality results of all assemblies against the five fungal pathogens at the contigs level.
From: Assessment of de novoassemblers for draft genomes: a case study with fungal genomes
Dataset | ABySS | IDBA-UD | Minia | SOAP | SPAdes | Sparse | Velvet | df_1 |
|---|---|---|---|---|---|---|---|---|
BcDw1 | 1.97 | 1.92 | 4.42 | 3.99 | 1.87 | 3.91 | 2.64 | 2.18 |
UCRNP2 | 2.39 | 1.61 | 4.69 | 3.73 | 2.44 | 3.81 | 2.52 | 1.89 |
UCRPA7 | 1.95 | 1.75 | 5.24 | 3.88 | 1.48 | 4.58 | 3.16 | 2.17 |
UCREL1 | 2.21 | 1.84 | 5.11 | 5.01 | 1.85 | 4.87 | 3.14 | 2.75 |
PST21 | 3.27 | 1.76 | 4.64 | 5.58 | ------ | 4.28 | 3.08 | 1.38 |