Table 1 Characteristics of Proteales chloroplast genomes and primary noncoding indels contributing to length differences, in base pairs
Region | Macadamia | Platanus | Nelumbo |
|---|---|---|---|
Chloroplast genome | 159714 | 161791 | 163307 |
Inverted Repeats, IRA and IRB | 26404 | 25066 | 26065 |
ycf2 to trnL-CAA spacer | 1014 | 424 | 1022 |
trnI-GAU intron | 946 | 942 | 760 |
Small Single Copy, SSC | 18813 | 19509 | 19330 |
ndhG to ndhI spacer | 362 | 380 | 467 |
ndhA intron | 2194 | 2187 | 1915 |
rpl32 to trnL-UAG spacer | 1149 | 647 | 1070 |
Large Single Copy, LSC | 88093 | 92150 | 91847 |
rps16 to trnQ-UUG spacer | 1784 | 1299 | 2051 |
ndhC to trnV-UAC spacer | 517 | 2266 | 2156 |
ycf3 to trnS-GGA spacer | 308 | 889 | 926 |
petA to psbJ spacer | 841 | 984 | 1105 |
trnT-UGU to trnL-UAA spacer | 649 | 1419 | 1031 |
IRB-SSC Junction | Â | Â | Â |
trnN-GUU to ndhF spacer | 1555 | 746 | 1668 |
SSC-IRA Junction | Â | Â | Â |
ycf 1 | 5538 | 5748 | 5520 |