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Table 2 Distribution of Macadamia integrifolia chloroplast simple sequence repeat (cpSSR) regions

From: Complete chloroplast genome of Macadamia integrifoliaconfirms the position of the Gondwanan early-diverging eudicot family Proteaceae

cpSSR

repeat motif

Length bp

start

end

Region

cpSSR

repeat motif

Length bp

start

end

Region

1

A

15

273

288

LSC

trnH-psbA

32

A

10

67617

67627

LSC

psbF exon

2

A

10

1845

1855

LSC

trnK-matK

33

A

13

68887

68900

LSC

psbE-petL

3

A

13

4462

4475

LSC

trnK-rps16

34

T

12

70983

70995

LSC

psaJ-rpl33

4 b

T

11

5269

5280

LSC

trnK-rps16

35

A

10

72914

72924

LSC

rpl20-rps12

5

T

15

6997

7012

LSC

rps16-trnQ

36

A

16

72943

72959

LSC

rpl20-rps12

6

A

10

7141

7151

LSC

rps16-trnQ

37 a,b

T

10

74379

74389

LSC

clpP intron

7

A

12

9935

9947

LSC

trnS-trnG

38

T

10

74633

74643

LSC

clpP intron

8 b

T

14

11345

11359

LSC

trnG-trnR

39

A

11

75028

75039

LSC

clpP intron

9

A

17

11514

11531

LSC

trnR-atpA

40 a

A

14

81691

81705

LSC

petD-rpoA

10 a

A

10

13186

13196

LSC

atpA-atpF

41 a

T

13

83842

83855

LSC

infa-rps8

11 b

A

11

14349

14360

LSC

atpF intron

42

T

17

84941

84958

LSC

rpl14-rpl16

12

T

11

15497

15508

LSC

atpH-atpI

43

T

12

86421

86433

LSC

rps16-rps3

13

T

10

17839

17849

LSC

rps2 exon

44

AT

16

4782

4798

LSC

trnK-rps16

14

A

10

18105

18115

LSC

rps2-rpoC2

45

AT

16

36068

36084

LSC

trnT-psbD

15 b

T

10

20185

20195

LSC

rpoC2 exon

       

16 a,b

T

11

20316

20327

LSC

rpoC2 exon

46

T

11

88100

88111

IRB

rps19-rpl2

17

T

12

22934

22946

LSC

rpoC1 exon

47

T

10

114378

114388

IRB

ycf1 exon

18

A

11

30325

30336

LSC

trnC-petN

48

T

10

114477

114487

IRB

ycf1 exon

19

T

10

32312

32322

LSC

psbM-trnD

       

20 a

T

10

34365

34375

LSC

trnE-trnT

49 b

T

18

117406

117424

SSC

ndhF-rpl32

21

A

12

35944

35956

LSC

trnT-psbD

50

A

10

125592

125602

SSC

ndhA intron

22 a

T

10

39082

39092

LSC

psbC-trnS

51

A

14

125805

125819

SSC

ndhA intron

23

A

16

39929

39945

LSC

psbZ-trnG

52

T

10

128234

128244

SSC

ndhH-rps15

24 a

A

15

48007

48022

LSC

ycf3 intron

53

T

12

129915

129927

SSC

ycf1 exon

25

A

12

48271

48283

LSC

ycf3-trnS

54

A

15

130143

130158

SSC

ycf1 exon

26

T

14

49898

49912

LSC

trnT-trnL

55 a

A

11

132293

132304

SSC

ycf1 exon

27

T

14

51057

51071

LSC

trnL-trnF

56

T

10

132660

132670

SSC

ycf1 exon

28

T

13

51972

51985

LSC

trnF-ndhJ

       

29

T

10

52600

52610

LSC

ndhJ-ndhK

57

A

10

133320

133330

IRA

ycf1 exon

30 a,b

T

10

55335

55345

LSC

trnM-atpE

58

A

10

133419

133429

IRA

ycf1 exon

31

T

14

63629

63643

LSC

ycf4-cemA

59

A

11

159696

159707

IRA

rpl2-trnH

cpSSR regions also present in Platanus (a), Nelumbo (b)