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Table 2 Distribution of Macadamia integrifolia chloroplast simple sequence repeat (cpSSR) regions

From: Complete chloroplast genome of Macadamia integrifoliaconfirms the position of the Gondwanan early-diverging eudicot family Proteaceae

cpSSR repeat motif Length bp start end Region cpSSR repeat motif Length bp start end Region
1 A 15 273 288 LSC trnH-psbA 32 A 10 67617 67627 LSC psbF exon
2 A 10 1845 1855 LSC trnK-matK 33 A 13 68887 68900 LSC psbE-petL
3 A 13 4462 4475 LSC trnK-rps16 34 T 12 70983 70995 LSC psaJ-rpl33
4 b T 11 5269 5280 LSC trnK-rps16 35 A 10 72914 72924 LSC rpl20-rps12
5 T 15 6997 7012 LSC rps16-trnQ 36 A 16 72943 72959 LSC rpl20-rps12
6 A 10 7141 7151 LSC rps16-trnQ 37 a,b T 10 74379 74389 LSC clpP intron
7 A 12 9935 9947 LSC trnS-trnG 38 T 10 74633 74643 LSC clpP intron
8 b T 14 11345 11359 LSC trnG-trnR 39 A 11 75028 75039 LSC clpP intron
9 A 17 11514 11531 LSC trnR-atpA 40 a A 14 81691 81705 LSC petD-rpoA
10 a A 10 13186 13196 LSC atpA-atpF 41 a T 13 83842 83855 LSC infa-rps8
11 b A 11 14349 14360 LSC atpF intron 42 T 17 84941 84958 LSC rpl14-rpl16
12 T 11 15497 15508 LSC atpH-atpI 43 T 12 86421 86433 LSC rps16-rps3
13 T 10 17839 17849 LSC rps2 exon 44 AT 16 4782 4798 LSC trnK-rps16
14 A 10 18105 18115 LSC rps2-rpoC2 45 AT 16 36068 36084 LSC trnT-psbD
15 b T 10 20185 20195 LSC rpoC2 exon        
16 a,b T 11 20316 20327 LSC rpoC2 exon 46 T 11 88100 88111 IRB rps19-rpl2
17 T 12 22934 22946 LSC rpoC1 exon 47 T 10 114378 114388 IRB ycf1 exon
18 A 11 30325 30336 LSC trnC-petN 48 T 10 114477 114487 IRB ycf1 exon
19 T 10 32312 32322 LSC psbM-trnD        
20 a T 10 34365 34375 LSC trnE-trnT 49 b T 18 117406 117424 SSC ndhF-rpl32
21 A 12 35944 35956 LSC trnT-psbD 50 A 10 125592 125602 SSC ndhA intron
22 a T 10 39082 39092 LSC psbC-trnS 51 A 14 125805 125819 SSC ndhA intron
23 A 16 39929 39945 LSC psbZ-trnG 52 T 10 128234 128244 SSC ndhH-rps15
24 a A 15 48007 48022 LSC ycf3 intron 53 T 12 129915 129927 SSC ycf1 exon
25 A 12 48271 48283 LSC ycf3-trnS 54 A 15 130143 130158 SSC ycf1 exon
26 T 14 49898 49912 LSC trnT-trnL 55 a A 11 132293 132304 SSC ycf1 exon
27 T 14 51057 51071 LSC trnL-trnF 56 T 10 132660 132670 SSC ycf1 exon
28 T 13 51972 51985 LSC trnF-ndhJ        
29 T 10 52600 52610 LSC ndhJ-ndhK 57 A 10 133320 133330 IRA ycf1 exon
30 a,b T 10 55335 55345 LSC trnM-atpE 58 A 10 133419 133429 IRA ycf1 exon
31 T 14 63629 63643 LSC ycf4-cemA 59 A 11 159696 159707 IRA rpl2-trnH
cpSSR regions also present in Platanus (a), Nelumbo (b)