cpSSR | repeat motif | Length bp | start | end | Region | cpSSR | repeat motif | Length bp | start | end | Region | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | A | 15 | 273 | 288 | LSC | trnH-psbA | 32 | A | 10 | 67617 | 67627 | LSC | psbF exon |
2 | A | 10 | 1845 | 1855 | LSC | trnK-matK | 33 | A | 13 | 68887 | 68900 | LSC | psbE-petL |
3 | A | 13 | 4462 | 4475 | LSC | trnK-rps16 | 34 | T | 12 | 70983 | 70995 | LSC | psaJ-rpl33 |
4 b | T | 11 | 5269 | 5280 | LSC | trnK-rps16 | 35 | A | 10 | 72914 | 72924 | LSC | rpl20-rps12 |
5 | T | 15 | 6997 | 7012 | LSC | rps16-trnQ | 36 | A | 16 | 72943 | 72959 | LSC | rpl20-rps12 |
6 | A | 10 | 7141 | 7151 | LSC | rps16-trnQ | 37 a,b | T | 10 | 74379 | 74389 | LSC | clpP intron |
7 | A | 12 | 9935 | 9947 | LSC | trnS-trnG | 38 | T | 10 | 74633 | 74643 | LSC | clpP intron |
8 b | T | 14 | 11345 | 11359 | LSC | trnG-trnR | 39 | A | 11 | 75028 | 75039 | LSC | clpP intron |
9 | A | 17 | 11514 | 11531 | LSC | trnR-atpA | 40 a | A | 14 | 81691 | 81705 | LSC | petD-rpoA |
10 a | A | 10 | 13186 | 13196 | LSC | atpA-atpF | 41 a | T | 13 | 83842 | 83855 | LSC | infa-rps8 |
11 b | A | 11 | 14349 | 14360 | LSC | atpF intron | 42 | T | 17 | 84941 | 84958 | LSC | rpl14-rpl16 |
12 | T | 11 | 15497 | 15508 | LSC | atpH-atpI | 43 | T | 12 | 86421 | 86433 | LSC | rps16-rps3 |
13 | T | 10 | 17839 | 17849 | LSC | rps2 exon | 44 | AT | 16 | 4782 | 4798 | LSC | trnK-rps16 |
14 | A | 10 | 18105 | 18115 | LSC | rps2-rpoC2 | 45 | AT | 16 | 36068 | 36084 | LSC | trnT-psbD |
15 b | T | 10 | 20185 | 20195 | LSC | rpoC2 exon | Â | Â | Â | Â | Â | Â | Â |
16 a,b | T | 11 | 20316 | 20327 | LSC | rpoC2 exon | 46 | T | 11 | 88100 | 88111 | IRB | rps19-rpl2 |
17 | T | 12 | 22934 | 22946 | LSC | rpoC1 exon | 47 | T | 10 | 114378 | 114388 | IRB | ycf1 exon |
18 | A | 11 | 30325 | 30336 | LSC | trnC-petN | 48 | T | 10 | 114477 | 114487 | IRB | ycf1 exon |
19 | T | 10 | 32312 | 32322 | LSC | psbM-trnD | Â | Â | Â | Â | Â | Â | Â |
20 a | T | 10 | 34365 | 34375 | LSC | trnE-trnT | 49 b | T | 18 | 117406 | 117424 | SSC | ndhF-rpl32 |
21 | A | 12 | 35944 | 35956 | LSC | trnT-psbD | 50 | A | 10 | 125592 | 125602 | SSC | ndhA intron |
22 a | T | 10 | 39082 | 39092 | LSC | psbC-trnS | 51 | A | 14 | 125805 | 125819 | SSC | ndhA intron |
23 | A | 16 | 39929 | 39945 | LSC | psbZ-trnG | 52 | T | 10 | 128234 | 128244 | SSC | ndhH-rps15 |
24 a | A | 15 | 48007 | 48022 | LSC | ycf3 intron | 53 | T | 12 | 129915 | 129927 | SSC | ycf1 exon |
25 | A | 12 | 48271 | 48283 | LSC | ycf3-trnS | 54 | A | 15 | 130143 | 130158 | SSC | ycf1 exon |
26 | T | 14 | 49898 | 49912 | LSC | trnT-trnL | 55 a | A | 11 | 132293 | 132304 | SSC | ycf1 exon |
27 | T | 14 | 51057 | 51071 | LSC | trnL-trnF | 56 | T | 10 | 132660 | 132670 | SSC | ycf1 exon |
28 | T | 13 | 51972 | 51985 | LSC | trnF-ndhJ | Â | Â | Â | Â | Â | Â | Â |
29 | T | 10 | 52600 | 52610 | LSC | ndhJ-ndhK | 57 | A | 10 | 133320 | 133330 | IRA | ycf1 exon |
30 a,b | T | 10 | 55335 | 55345 | LSC | trnM-atpE | 58 | A | 10 | 133419 | 133429 | IRA | ycf1 exon |
31 | T | 14 | 63629 | 63643 | LSC | ycf4-cemA | 59 | A | 11 | 159696 | 159707 | IRA | rpl2-trnH |
cpSSR regions also present in Platanus (a), Nelumbo (b) |