Skip to main content

Table 2 List of species selected for sequence analysis of RdRPs and reconciliation analysis of Argonautes.

From: funRNA: a fungi-centered genomics platform for genes encoding key components of RNAi

Species name Taxonomy Argonaute gene RdRP gene
Methanocaldococcus jannaschii DSM 2661 Archaea>Euryarchaeota>N/D 1 0
Pyrococcus furiosus DSM 3638 Archaea>Crenarchaeota>N/D 1 0
Aquifex aeolicus VF5 Bacteria>Aquificae>N/D 1 0
Aspergillus fumigatus Af293 Fungi>Ascomycota>Pezizomycotina 2 2
Aspergillus nidulans Fungi>Ascomycota>Pezizomycotina 1 2
Botrytis cinerea Fungi>Ascomycota>Pezizomycotina 2 2
Coccidioides immitis RS Fungi>Ascomycota>Pezizomycotina 3 3
Colletotrichum graminicola M1.001 Fungi>Ascomycota>Pezizomycotina 2 3
Fusarium graminearum Fungi>Ascomycota>Pezizomycotina 2 5
Fusarium oxysporum Fungi>Ascomycota>Pezizomycotina 5 5
Histoplasma capsulatum H88 Fungi>Ascomycota>Pezizomycotina 2 3
Magnaporthe oryzae 70-15 Fungi>Ascomycota>Pezizomycotina 3 3
Mycosphaerella graminicola Fungi>Ascomycota>Pezizomycotina 4 2
Neurospora crassa Fungi>Ascomycota>Pezizomycotina 2 3
Podospora anserina Fungi>Ascomycota>Pezizomycotina 2 4
Candida albicans Fungi>Ascomycota>Saccharomycotina 1 0
Schizosaccharomyces pombe Fungi>Ascomycota>Taphrinomycotina 1 1
Heterobasidion irregulare TC 32-1 Fungi>Basidiomycota>Agaricomycotina 7 7
Laccaria bicolor Fungi>Basidiomycota>Agaricomycotina 6 6
Phanerochaete chrysosporium Fungi>Basidiomycota>Agaricomycotina 6 8
Serpula lacrymans Fungi>Basidiomycota>Agaricomycotina 6 6
Cryptococcus neoformans var. grubii H99 Fungi>Basidiomycota>Agaricomycotina 1 1
Melampsora laricis-populina Fungi>Basidiomycota>Pucciniomycotina 2 5
Puccinia graminis Fungi>Basidiomycota>Pucciniomycotina 2 5
Allomyces macrogynus Fungi>Blastocladiomycota>N/D 8 0
Batrachochytrium dendrobatidis JAM81 Fungi>Chytridiomycota>N/D 2 0
Phycomyces blakesleeanus Fungi>Zygomycota>Mucoromycotina 2 4
Rhizopus oryzae Fungi>Zygomycota>Mucoromycotina 2 5
Phytophthora infestans Chromista>Oomycota>Oomycotina 5 1
Arabidopsis thaliana Viridiplantae>Streptophyta>N/D 14 6
Oryza sativa Viridiplantae>Streptophyta>N/D 25 6
Drosophila melanogaster Metazoa>Arthropoda>N/D 12 0
Caenorhabditis elegans Metazoa>Nematoda>N/D 31 4
Homo sapiens Metazoa>Chordata>Craniata 17 0