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Table 2 List of species selected for sequence analysis of RdRPs and reconciliation analysis of Argonautes.

From: funRNA: a fungi-centered genomics platform for genes encoding key components of RNAi

Species name

Taxonomy

Argonaute gene

RdRP gene

Methanocaldococcus jannaschii DSM 2661

Archaea>Euryarchaeota>N/D

1

0

Pyrococcus furiosus DSM 3638

Archaea>Crenarchaeota>N/D

1

0

Aquifex aeolicus VF5

Bacteria>Aquificae>N/D

1

0

Aspergillus fumigatus Af293

Fungi>Ascomycota>Pezizomycotina

2

2

Aspergillus nidulans

Fungi>Ascomycota>Pezizomycotina

1

2

Botrytis cinerea

Fungi>Ascomycota>Pezizomycotina

2

2

Coccidioides immitis RS

Fungi>Ascomycota>Pezizomycotina

3

3

Colletotrichum graminicola M1.001

Fungi>Ascomycota>Pezizomycotina

2

3

Fusarium graminearum

Fungi>Ascomycota>Pezizomycotina

2

5

Fusarium oxysporum

Fungi>Ascomycota>Pezizomycotina

5

5

Histoplasma capsulatum H88

Fungi>Ascomycota>Pezizomycotina

2

3

Magnaporthe oryzae 70-15

Fungi>Ascomycota>Pezizomycotina

3

3

Mycosphaerella graminicola

Fungi>Ascomycota>Pezizomycotina

4

2

Neurospora crassa

Fungi>Ascomycota>Pezizomycotina

2

3

Podospora anserina

Fungi>Ascomycota>Pezizomycotina

2

4

Candida albicans

Fungi>Ascomycota>Saccharomycotina

1

0

Schizosaccharomyces pombe

Fungi>Ascomycota>Taphrinomycotina

1

1

Heterobasidion irregulare TC 32-1

Fungi>Basidiomycota>Agaricomycotina

7

7

Laccaria bicolor

Fungi>Basidiomycota>Agaricomycotina

6

6

Phanerochaete chrysosporium

Fungi>Basidiomycota>Agaricomycotina

6

8

Serpula lacrymans

Fungi>Basidiomycota>Agaricomycotina

6

6

Cryptococcus neoformans var. grubii H99

Fungi>Basidiomycota>Agaricomycotina

1

1

Melampsora laricis-populina

Fungi>Basidiomycota>Pucciniomycotina

2

5

Puccinia graminis

Fungi>Basidiomycota>Pucciniomycotina

2

5

Allomyces macrogynus

Fungi>Blastocladiomycota>N/D

8

0

Batrachochytrium dendrobatidis JAM81

Fungi>Chytridiomycota>N/D

2

0

Phycomyces blakesleeanus

Fungi>Zygomycota>Mucoromycotina

2

4

Rhizopus oryzae

Fungi>Zygomycota>Mucoromycotina

2

5

Phytophthora infestans

Chromista>Oomycota>Oomycotina

5

1

Arabidopsis thaliana

Viridiplantae>Streptophyta>N/D

14

6

Oryza sativa

Viridiplantae>Streptophyta>N/D

25

6

Drosophila melanogaster

Metazoa>Arthropoda>N/D

12

0

Caenorhabditis elegans

Metazoa>Nematoda>N/D

31

4

Homo sapiens

Metazoa>Chordata>Craniata

17

0