Table 3 Domain profile definitions used in funRNA
From: funRNA: a fungi-centered genomics platform for genes encoding key components of RNAi
Gene family | InterPro accession number | Domain description | Number of genes* | Number of genomes* |
|---|---|---|---|---|
Argonaute | IPR003100 | Argonaute/Dicer protein, PAZ | 1,163 (396) | 209 (122) |
| Â | IPR003165 | Stem cell self-renewal protein Piwi | Â | Â |
Dicer | IPR000999 | Ribonuclease III | 442 (232) | 180 (111) |
| Â | IPR001159** | Double-stranded RNA-binding | Â | Â |
| Â | IPR005034** | Dicer double-stranded RNA-binding fold | Â | Â |
RdRP | IPR007855 | RNA-dependent RNA polymerase, eukaryotic type | 678 (441) | 157 (111) |