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Table 1 Variants in the Marwari horse genome.

From: Whole genome sequence and analysis of the Marwari horse breed and its genetic origin

Description SNVs Indels
  Homozygous Heterozygous Novel Homozygous Heterozygous Novel
Total 2,383,702 3,539,864 1,577,725 343,789 234,266 249,609
INTERGENIC 1,565,078 2,352,370 1,060,195 215,679 153,412 164,564
INTRAGENIC 3,474 5,134 1,919 556 332 329
UPSTREAM 113,184 168,184 74,923 18,300 10,582 11,178
DOWNSTREAM 111,918 166,365 75,592 17,866 11,504 12,203
UTR_5_PRIME 600 684 279 171 27 25
UTR_3_PRIME 1,188 1,660 802 264 129 149
INTRON 569,725 817,541 351,960 89,394 57,856 60,614
Noncoding exon variant 3,259 4,368 3,433 280 198 244
Synonymous mutation 8,053 12,586 4,209 0 0 0
Nonsynonymous mutation 7,223 10,972 4,413 0 0 0
Indels in coding region 0 0 0 1,279 226 303