Table 1 Variants in the Marwari horse genome.
From: Whole genome sequence and analysis of the Marwari horse breed and its genetic origin
Description | SNVs | Indels | ||||
|---|---|---|---|---|---|---|
| Â | Homozygous | Heterozygous | Novel | Homozygous | Heterozygous | Novel |
Total | 2,383,702 | 3,539,864 | 1,577,725 | 343,789 | 234,266 | 249,609 |
INTERGENIC | 1,565,078 | 2,352,370 | 1,060,195 | 215,679 | 153,412 | 164,564 |
INTRAGENIC | 3,474 | 5,134 | 1,919 | 556 | 332 | 329 |
UPSTREAM | 113,184 | 168,184 | 74,923 | 18,300 | 10,582 | 11,178 |
DOWNSTREAM | 111,918 | 166,365 | 75,592 | 17,866 | 11,504 | 12,203 |
UTR_5_PRIME | 600 | 684 | 279 | 171 | 27 | 25 |
UTR_3_PRIME | 1,188 | 1,660 | 802 | 264 | 129 | 149 |
INTRON | 569,725 | 817,541 | 351,960 | 89,394 | 57,856 | 60,614 |
Noncoding exon variant | 3,259 | 4,368 | 3,433 | 280 | 198 | 244 |
Synonymous mutation | 8,053 | 12,586 | 4,209 | 0 | 0 | 0 |
Nonsynonymous mutation | 7,223 | 10,972 | 4,413 | 0 | 0 | 0 |
Indels in coding region | 0 | 0 | 0 | 1,279 | 226 | 303 |