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Table 5 Performance of adding 2,3,5,8 positions respectively to MHC2MIL(fl+kp) on DR. For each allele, the largest value is displayed in boldface.

From: MHC2MIL: a novel multiple instance learning based method for MHC-II peptide binding prediction by considering peptide flanking region and residue positions

allele MHC2MIL(fl) MHC2MIL(fl+kp) MHC2MIL(+2) MHC2MIL(+3) MHC2MIL(+5) MHC2MIL(+8)
HLA-DRB1_0101 0.786 0.787 0.792 0.787 0.785 0.785
HLA-DRB1_0301 0.808 0.803 0.809 0.807 0.799 0.806
HLA-DRB1_0401 0.741 0.732 0.736 0.738 0.727 0.734
HLA-DRB1_0404 0.791 0.782 0.786 0.783 0.773 0.775
HLA-DRB1_0405 0.792 0.785 0.792 0.786 0.790 0.785
HLA-DRB1_0701 0.819 0.823 0.825 0.823 0.823 0.821
HLA-DRB1_0802 0.712 0.716 0.718 0.715 0.720 0.721
HLA-DRB1_0901 0.733 0.735 0.736 0.734 0.731 0.728
HLA-DRB1_1101 0.834 0.838 0.843 0.842 0.838 0.837
HLA-DRB1_1302 0.745 0.734 0.746 0.744 0.733 0.735
HLA-DRB1_1501 0.765 0.763 0.770 0.766 0.764 0.759
HLA-DRB3_0101 0.756 0.757 0.762 0.755 0.750 0.749
HLA-DRB4_0101 0.787 0.792 0.797 0.791 0.790 0.788
HLA-DRB5_0101 0.803 0.808 0.811 0.806 0.799 0.805
average AUC 0.777 0.775 0.780 0.777 0.773 0.773