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Table 1 Comparison of homopolymers between high coverage and low coverage areas across 24 samples.

From: Underlying Data for Sequencing the Mitochondrial Genome with the Massively Parallel Sequencing Platform Ion Torrent PGM

  High coverage areas1 Low coverage areas2
Homopolymer type Number of Homopolymers Number of Homopolymers
AA 276 320
CC 3 275 347
GG 167 81
TT 238 225
AAA 104 95
CCC 76 124
GGG 31 12
TTT 82 42
AAAA 22 33
CCCC 31 54
GGGG 4 2
TTTT 18 12
AAAAA 10 11
CCCCC 8 28
GGGGG 2 0
TTTTT 4 3
AAAAAA 4 6
CCCCCC 1 8
GGGGGG 1 0
TTTTTT 2 1
AAAAAAA 2 2
CCCCCCC 0 1
TTTTTTT 1 0
AAAAAAAA 0 1
  1. 1 Total number of bases in high coverage areas is 6858, and GC content is 44%. 2 Total number of bases in low coverage areas is 6760, and GC content is 47%. 3 For quick reference, cytosine homopolymers are in bold.