Figure 4

Accuracy of the method on simulated data. For every number of loci, the rightmost bar corresponds to inference from true gene trees and the other three bars, from left to right, correspond to inference from estimated gene trees from sequences of lengths 250, 500 and 1000, respectively. The dark blue region corresponds to the number of times the true network was returned as the optimal network after the search. The green region corresponds to the number of times the true network is not the optimal network found by the search, but is the optimal one among the top 5 species networks after optimizing their branch lengths and inheritance probabilities under maximum pseudo-likelihood. All other scenarios are represented by the maroon region.